Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022453.1 Corchorus olitorius cultivar O-4 contig22486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41754

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--84
3
26.7
3
100
0
160
66
0
0
33
0.92
339--1817
332
4.5
328
77
8
1158
33
13
15
37
1.87
5987--6030
15
2.8
16
82
10
54
45
0
2
52
1.13
6367--11053
334
14.1
332
77
7
4008
33
14
14
36
1.87
16943--17026
31
2.7
30
78
12
82
42
19
5
32
1.75
29797--29821
12
2.1
12
100
0
50
40
8
28
24
1.83
32861--32901
20
2.0
20
85
0
55
56
7
2
34
1.40
33209--33289
39
2.1
39
88
6
119
51
9
3
34
1.53
35077--35101
12
2.1
12
100
0
50
24
28
8
40
1.83

Tables:   1

The End!