Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022456.1 Corchorus olitorius cultivar O-4 contig22489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83095

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14303--14364
21
2.7
23
75
14
65
25
4
59
9
1.49
14314--14364
21
2.4
21
90
0
75
25
5
58
9
1.52
16319--16355
19
2.0
19
89
5
58
64
0
0
35
0.94
17267--17296
12
2.4
13
94
5
53
80
0
13
6
0.91
22876--22940
32
2.1
32
86
11
91
1
49
4
44
1.32
24569--24627
27
2.2
27
84
0
73
25
28
15
30
1.96
24583--24664
9
9.1
9
74
10
78
29
26
13
30
1.94
24583--24669
36
2.4
36
98
0
165
28
29
12
28
1.93
45043--45081
14
2.9
13
80
3
51
53
2
2
41
1.28
45067--45313
123
1.9
128
90
7
396
48
1
10
38
1.48
46919--46969
22
2.3
22
86
0
66
13
37
31
17
1.89
50844--50881
19
2.0
19
85
10
51
36
5
0
57
1.21
65420--65492
29
2.4
30
84
8
87
45
15
16
23
1.85
68537--69576
338
3.1
328
82
7
1116
37
15
13
33
1.87
76726--77976
324
3.9
322
84
3
1518
35
17
15
31
1.91
78275--79159
323
2.8
316
83
5
1041
35
17
15
31
1.91
79621--80887
327
3.9
321
81
9
1330
35
16
14
33
1.90

Tables:   1

The End!