Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022458.1 Corchorus olitorius cultivar O-4 contig22491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119722

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2244--2298
21
2.7
21
86
5
78
40
10
16
32
1.83
17345--17390
14
3.6
14
72
22
55
78
8
0
13
0.97
17338--17390
24
2.2
23
90
9
88
77
7
0
15
0.98
35023--35311
145
2.1
138
91
6
465
39
16
13
30
1.87
40683--40711
15
2.0
15
93
6
51
44
0
0
55
0.99
40767--40801
11
3.2
11
83
0
52
77
17
5
0
0.96
47040--47134
33
2.9
33
96
0
172
21
35
17
25
1.95
59792--59835
21
2.1
21
95
0
79
36
27
13
22
1.92
61754--61828
21
3.3
21
72
22
62
10
1
58
29
1.40
61754--61831
24
3.2
24
81
3
95
10
1
58
29
1.39
61775--61836
21
3.0
21
80
0
70
9
1
59
29
1.38
62094--62217
66
1.9
66
84
0
167
23
2
59
14
1.47
62162--62259
42
2.3
43
91
0
137
23
6
59
11
1.54
62181--62260
24
3.6
24
68
25
75
25
6
58
10
1.53
62096--62238
66
2.2
65
80
7
155
22
2
60
13
1.46
62232--62308
27
2.9
27
96
0
136
22
11
51
14
1.74
62336--62395
21
2.9
21
87
0
84
35
21
35
8
1.84
63762--63791
15
2.0
15
93
0
51
20
6
30
43
1.77
66690--66714
3
8.3
3
100
0
50
36
0
32
32
1.58
84900--84953
25
2.2
25
100
0
108
48
3
14
33
1.62
88340--88377
21
1.9
19
85
15
51
23
28
10
36
1.88
94146--94172
13
2.1
13
100
0
54
29
29
0
40
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99774--99853
31
2.5
32
80
9
92
35
12
26
26
1.92
101979--102026
24
2.1
23
88
7
71
12
16
10
60
1.58
113922--114061
31
4.5
31
87
0
163
21
23
22
32
1.98
115699--115733
18
1.9
18
100
0
70
45
5
8
40
1.58
116320--116363
5
9.2
5
90
9
74
22
0
0
77
0.77
116322--116361
9
4.3
9
82
17
55
20
0
0
80
0.72
116322--116363
14
3.0
14
100
0
84
21
0
0
78
0.75
116320--116363
19
2.3
19
92
7
72
22
0
0
77
0.77
117868--117902
17
2.0
18
88
5
54
45
5
0
48
1.26
119404--119485
42
1.9
42
92
2
137
47
15
6
30
1.70
119550--119660
55
2.0
55
100
0
222
40
1
23
34
1.65

Tables:   1

The End!