Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002246.1 Corchorus olitorius cultivar O-4 contig02246, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22


Found at i:1029 original size:156 final size:154

Alignment explanation


    Indices: 627--1153  Score: 876
    Period size: 156  Copynumber: 3.4  Consensus size: 154

        617 TTTACACCCC

                                    *                             *          
        627 TAGTTAGCCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAAGATTCAAAAC
          1 TAGTTAGCCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC

             *               *                                               
        692 GGAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
         66 GAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT

                                    
        757 GGACTAATCTCACCAAAATGATTA
        131 GGACTAATCTCACCAAAATGATTA

                   *                *        *         *                   * 
        781 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA-GGTTGCGAAATCGAAGACGATTCAAATC
          1 TAGTTAGCCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC

                       *                                     *               
        845 GAAACTAATGGCCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAGT
         66 GAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT

            *            *           
        910 AGACTAATACTCAGCAAAATGATTA
        131 GGACTAAT-CTCACCAAAATGATTA

                                                                *            
        935 TAGTTAGCCCATAAACAAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGATGACGATTCAAAA
          1 TAGTTAGCCCATAAAC-AATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAA

                                                                             
       1000 CGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTCACA
         65 CGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAAC-TTCACA

                                      
       1065 GTGGACTAATCTCACCAAAATGATTA
        129 GTGGACTAATCTCACCAAAATGATTA

                                             *    *                        
       1091 TAGTTAGCCCATAAACAATGGAAACAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
          1 TAGTTAGCCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAA


Statistics
Matches: 345,  Mismatches: 24, Indels: 7
        0.92            0.06        0.02

Matches are distributed among these distances:
 153   93  0.27
 154   64  0.19
 155   62  0.18
 156  111  0.32
 157   15  0.04

ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20


Consensus pattern (154 bp):   
TAGTTAGCCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC
GAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
GGACTAATCTCACCAAAATGATTA
Done.