Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022462.1 Corchorus olitorius cultivar O-4 contig22495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126731

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7588--7630
22
2.0
22
95
0
77
46
20
11
20
1.82
7663--7730
35
2.0
34
88
2
100
41
17
10
30
1.83
7916--8052
71
1.9
71
89
0
211
42
12
14
30
1.83
10259--10284
10
2.6
10
100
0
52
50
34
7
7
1.60
15923--15965
21
2.0
23
86
9
63
37
4
9
48
1.56
16850--17020
85
2.0
85
95
0
306
20
26
28
25
1.99
22083--22226
72
2.0
72
100
0
288
26
20
20
31
1.98
26585--26632
26
1.9
25
87
8
71
31
6
16
45
1.72
27998--28234
118
2.0
118
97
0
447
39
12
9
38
1.75
31978--32035
28
2.1
28
93
6
102
10
13
3
72
1.24
42826--42954
64
2.0
64
95
0
231
26
18
17
37
1.92
52882--52984
46
2.2
46
100
0
156
52
6
1
38
1.39
55359--55432
28
2.6
28
93
2
121
56
16
8
18
1.64
64041--64091
17
3.1
16
86
8
66
35
21
21
21
1.96
66550--66725
87
2.0
87
86
2
246
19
20
19
40
1.92
71876--71945
2
39.0
2
73
25
59
42
0
2
54
1.15
71881--71936
19
3.1
18
82
10
69
42
0
1
55
1.10
71876--71945
7
9.8
8
73
25
59
42
0
2
54
1.15
78892--78917
2
13.0
2
100
0
52
50
0
0
50
1.00
80117--80162
23
2.0
23
100
0
92
39
30
4
26
1.75
87710--87754
23
2.0
23
82
8
56
0
51
4
44
1.21
106494--106604
55
2.1
53
91
3
177
33
15
14
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118671--118707
14
2.4
16
86
8
51
2
13
5
78
1.03
126425--126455
15
2.1
15
100
0
62
19
6
12
61
1.53

Tables:   1

The End!