genome.fa.s22464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022464.1 Corchorus olitorius cultivar O-4 contig22497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41340

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165--1226	31	2.0	31	93	0	106	30	17	14	37	1.90
2306--2398	47	2.0	47	93	0	159	44	9	12	33	1.76
6766--6808	19	2.3	19	84	8	52	39	20	11	27	1.88
7569--7602	10	3.0	12	83	16	54	35	8	17	38	1.81
7376--7738	204	1.8	197	80	10	436	31	16	16	34	1.91
14063--14130	33	2.1	33	83	5	84	5	38	41	14	1.70
14527--14583	27	2.1	27	93	0	96	19	12	43	24	1.85
14868--14907	21	1.9	21	89	0	62	52	0	7	40	1.30
16694--16731	20	1.9	20	88	0	58	13	2	18	65	1.37
16691--16733	10	4.3	10	75	0	50	16	2	23	58	1.50
16973--17037	32	2.0	32	100	0	130	23	33	12	30	1.91
19976--20064	33	2.7	33	82	0	97	16	35	37	10	1.83
22760--22787	13	2.2	13	100	0	56	28	35	0	35	1.58
26571--26598	13	2.2	13	100	0	56	28	35	0	35	1.58
28839--28867	14	2.1	14	100	0	58	41	6	17	34	1.76
32250--32281	16	2.0	16	93	0	55	34	0	15	50	1.45
32266--32342	26	3.0	26	90	1	111	42	3	5	48	1.44
32988--34134	333	3.5	331	80	5	1132	37	15	14	32	1.88
33297--37036	970	3.9	966	77	11	2351	36	16	14	32	1.88
35325--35877	303	1.8	303	86	3	801	36	16	14	32	1.88
35662--37097	326	4.4	327	78	9	1392	35	15	14	33	1.89
35766--37035	316	3.9	313	78	7	918	35	16	15	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37392--37434	22	2.0	22	81	4	52	60	9	9	20	1.55
39029--39088	21	3.0	21	75	9	70	28	5	21	45	1.73
39659--39686	1	28.0	1	100	0	56	100	0	0	0	0.00

Tables:   1

The End!