Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022466.1 Corchorus olitorius cultivar O-4 contig22499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142761
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:1690 original size:98 final size:97
Alignment explanation
Indices: 1522--1896 Score: 315
Period size: 98 Copynumber: 3.8 Consensus size: 97
1512 TATAAATTAA
* * * * *
1522 AATGGTAGAAATAAAATAATTATAAA-ATATTGAATTTAATTAAATGAAAATAGAGTTTTTAGTA
1 AATGGTAAAAATAAAGTAATTATAAAGATATTAAATTTAATTGAATAAAAATAGAGTTTTTAGTA
*
1586 GAATAAAACTCTATATTTTGAAAAAAATAGTAC
66 GAATAAAACTATA-ATTTTGAAAAAAATAGTAC
1619 AATGGTAAAAATAAAGTAATTATAAAGATATTAAATTTAATTGAATAAAAATAGAGTTTTTAGTA
1 AATGGTAAAAATAAAGTAATTATAAAGATATTAAATTTAATTGAATAAAAATAGAGTTTTTAGTA
* ** *
1684 GAATAAAACTATAATAGTT--AAGTAAT-G-GC
66 GAATAAAACTATAAT-TTTGAAAAAAATAGTAC
* * ** * *
1713 -AT-TTAAGAAAT-ATGT--TTGATATAAGGATA-T-AATGGTCGATTCAATTAAGAAAATAAGG
1 AATGGTAA-AAATAAAGTAATT-ATA-AA-GATATTAAAT--TTAATTGAA-T-A-AAAAT-AGA
** * * * *
1771 GTATAATAGTCGATTCAAAAGTTTTACATTTTGAAAAAAATAGTAC
56 GT-TTTTAGTAGAAT-AAAA-CTATA-ATTTTGAAAAAAATAGTAC
*
1817 AATGGTAAAAATAAAGTAATTATAAAGATATTAAATTAAATTGAATAAAAATAGAGTTTTTAGTA
1 AATGGTAAAAATAAAGTAATTATAAAGATATTAAATTTAATTGAATAAAAATAGAGTTTTTAGTA
1882 GAATAAAACTATAAT
66 GAATAAAACTATAAT
1897 AGTTAAGTAA
Statistics
Matches: 213, Mismatches: 38, Indels: 54
0.70 0.12 0.18
Matches are distributed among these distances:
90 2 0.01
91 6 0.03
92 9 0.04
93 16 0.08
94 2 0.01
95 2 0.01
96 10 0.05
97 32 0.15
98 60 0.28
99 8 0.04
100 13 0.06
101 6 0.03
102 10 0.05
103 2 0.01
104 2 0.01
105 16 0.08
106 9 0.04
107 6 0.03
108 2 0.01
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.33
Consensus pattern (97 bp):
AATGGTAAAAATAAAGTAATTATAAAGATATTAAATTTAATTGAATAAAAATAGAGTTTTTAGTA
GAATAAAACTATAATTTTGAAAAAAATAGTAC
Found at i:2205 original size:218 final size:218
Alignment explanation
Indices: 1821--2239 Score: 601
Period size: 218 Copynumber: 1.9 Consensus size: 218
1811 TAGTACAATG
*
1821 GTAAAAATAAAGTAATTATAAAGATATTAAATTAAATTGAATAAAAATAGAGTTTTTAGTAGAAT
1 GTAAAAATAAAGTAATTATAAAGATATTAAATTAAATTAAATAAAAATAGAGTTTTTAGTAGAAT
* ** * * * * *
1886 AAAACTATAATAGTTAAGTAATGGCATTTAAGAAATATGTTTGAAAAATAAGGATATAATGGTCG
66 AAAACTATAAAAGTTAAACAATGACATTTAAGAAATATATTCGAAAAATAAGGATATAATGGACA
* * * * *
1951 ATTCAATTAAGAAAATAAGGGTATAATAGTCGATTCAAAAGTTTTATAAAACTCGTACATTTATA
131 AATCAATTAAGAAAATAAAGATATAATAGGCGATTCAAAAGTTTTACAAAACTCGTACATTTATA
2016 TATAGTATAGATAATATATAAAA
196 TATAGTATAGATAATATATAAAA
* * * * * *
2039 GTAAAAATTAAA-TAGTTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAG
1 GTAAAAA-TAAAGTAATTATAAAGATATTAAATTAAATTAAATAAAAATAGAGTTTTTAGTAGAA
2103 TAAAACTATAAAAGTTTAAACAATGACATTTAAGAAATATATTCGAAAAATAAGGATATAATGGA
65 TAAAACTATAAAAG-TTAAACAATGACATTTAAGAAATATATTCGAAAAATAAGGATATAATGGA
*
2168 CAAAT-ATATTAA-AAAATAAAGATATAATAGGCGATTCAAAAGTTTTACAAAACTCGTACTTTT
129 CAAATCA-ATTAAGAAAATAAAGATATAATAGGCGATTCAAAAGTTTTACAAAACTCGTACATTT
2231 ATATATAGT
193 ATATATAGT
2240 TTTATATATA
Statistics
Matches: 177, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
218 121 0.68
219 56 0.32
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (218 bp):
GTAAAAATAAAGTAATTATAAAGATATTAAATTAAATTAAATAAAAATAGAGTTTTTAGTAGAAT
AAAACTATAAAAGTTAAACAATGACATTTAAGAAATATATTCGAAAAATAAGGATATAATGGACA
AATCAATTAAGAAAATAAAGATATAATAGGCGATTCAAAAGTTTTACAAAACTCGTACATTTATA
TATAGTATAGATAATATATAAAA
Found at i:2244 original size:12 final size:12
Alignment explanation
Indices: 2227--2251 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2217 AAACTCGTAC
2227 TTTTATATATAG
1 TTTTATATATAG
2239 TTTTATATATAG
1 TTTTATATATAG
2251 T
1 T
2252 ATAGATTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TTTTATATATAG
Found at i:23731 original size:18 final size:18
Alignment explanation
Indices: 23701--23736 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
23691 TCTTCGTGTA
23701 TTCATGCAGAATATGAAGG
1 TTCATGCAGAATA-GAAGG
23720 TTCATG-AGAATAGAAGG
1 TTCATGCAGAATAGAAGG
23737 CAATTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 6 0.35
19 6 0.35
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
TTCATGCAGAATAGAAGG
Found at i:31994 original size:29 final size:31
Alignment explanation
Indices: 31937--32005 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
31927 CTCTCTATTA
* * *
31937 CATCATATTTTTTTTGTTGAAGTGCAAATTG
1 CATCATATTTTTTTTGGTGAAGAGAAAATTG
31968 CATCATATTTTTTTTGGT-AA-AGAAAATTG
1 CATCATATTTTTTTTGGTGAAGAGAAAATTG
31997 CATCATATT
1 CATCATATT
32006 GATTACTCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
29 16 0.46
30 2 0.06
31 17 0.49
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.46
Consensus pattern (31 bp):
CATCATATTTTTTTTGGTGAAGAGAAAATTG
Found at i:35613 original size:125 final size:125
Alignment explanation
Indices: 35444--35815 Score: 660
Period size: 125 Copynumber: 3.0 Consensus size: 125
35434 TGTATATGAT
* *
35444 GTTGTCGTTTTGTTCGTTGAATTCAATA-T--TAGGAATGAAACACGTGTATAGATGGGGGAAAC
1 GTTGTCGTTTCGTTTGTTGAATTCAATATTAGTAGGAATGAAACACGTGTATAGATGGGGGAAAC
*
35506 TCTCTGAGTTATACTTTACTCATCGTCCACGTGCTATCCTATGCTCCCGTGTCTCCTCAA
66 TCTCTGAGTTATACTTTACTCATCGTCCACGTGCTATCCTCTGCTCCCGTGTCTCCTCAA
*
35566 GTTGTTGTTTCGTTTGTTGAATTCAATATTAGTAGGAATGAAACACGTGTATAGATGGGGGAAAC
1 GTTGTCGTTTCGTTTGTTGAATTCAATATTAGTAGGAATGAAACACGTGTATAGATGGGGGAAAC
*
35631 TCTCTGAGTTATACTTTACTCATTGTCCACGTGCTATCCTCTGCTCCCGTGTCTCCTCAA
66 TCTCTGAGTTATACTTTACTCATCGTCCACGTGCTATCCTCTGCTCCCGTGTCTCCTCAA
*
35691 GTTGTCGTTTCGTTTGTTGAATTCAATATAAGTAGGAATGAAACACGTGTATAGATGGGGGAAAC
1 GTTGTCGTTTCGTTTGTTGAATTCAATATTAGTAGGAATGAAACACGTGTATAGATGGGGGAAAC
*
35756 TCTCTGAGTTATACTTCACTCATCGTCCACGTGCTATCCTCTGCTCCCGTGTCTCCTCAA
66 TCTCTGAGTTATACTTTACTCATCGTCCACGTGCTATCCTCTGCTCCCGTGTCTCCTCAA
35816 TAATTAAATC
Statistics
Matches: 238, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
122 25 0.11
123 1 0.00
125 212 0.89
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (125 bp):
GTTGTCGTTTCGTTTGTTGAATTCAATATTAGTAGGAATGAAACACGTGTATAGATGGGGGAAAC
TCTCTGAGTTATACTTTACTCATCGTCCACGTGCTATCCTCTGCTCCCGTGTCTCCTCAA
Found at i:36126 original size:10 final size:10
Alignment explanation
Indices: 36100--36131 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
36090 GATTCTGGAG
36100 TATACATTAC
1 TATACATTAC
36110 TAT--ATTAC
1 TATACATTAC
36118 TATACATTAC
1 TATACATTAC
36128 TATA
1 TATA
36132 TTTATATGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.44
Consensus pattern (10 bp):
TATACATTAC
Found at i:43124 original size:22 final size:22
Alignment explanation
Indices: 43096--43138 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
43086 GTTTCTATTG
43096 TTTCTATATTTTGCCTTTTAAC
1 TTTCTATATTTTGCCTTTTAAC
* *
43118 TTTCTATTTTTTTCCTTTTAA
1 TTTCTATATTTTGCCTTTTAA
43139 AAAAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTCTATATTTTGCCTTTTAAC
Found at i:48561 original size:13 final size:13
Alignment explanation
Indices: 48543--48569 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48533 GTTTTGGCAA
48543 TTACCTATAACAG
1 TTACCTATAACAG
48556 TTACCTATAACAG
1 TTACCTATAACAG
48569 T
1 T
48570 ATACATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TTACCTATAACAG
Found at i:52770 original size:48 final size:48
Alignment explanation
Indices: 52695--52795 Score: 168
Period size: 48 Copynumber: 2.1 Consensus size: 48
52685 TTCTTTCATT
*
52695 GATGAACATCAAATTCCTGATGATTCTCTGGTTGTATCTGATAAAAAA
1 GATGAACATCAAATTCCTGATGATTCTCTGGTTGCATCTGATAAAAAA
* *
52743 GATGAACATCAAATTCCTGATGGTTCTCTGGTTGCATCTGGTAAAAAA
1 GATGAACATCAAATTCCTGATGATTCTCTGGTTGCATCTGATAAAAAA
52791 G-TGAA
1 GATGAA
52796 AAATAAGGAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
47 4 0.08
48 46 0.92
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (48 bp):
GATGAACATCAAATTCCTGATGATTCTCTGGTTGCATCTGATAAAAAA
Found at i:57384 original size:330 final size:331
Alignment explanation
Indices: 56298--66637 Score: 12370
Period size: 330 Copynumber: 31.6 Consensus size: 331
56288 TTTTTTATTT
* * * * * * *
56298 TACACGATTTCGGCTAAAATTTTCCAATAATTGAGTCGAAAATTTTTTCCTCAATTTTTTCACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * *
56363 AATAGTAGTAAAAAATATATAATTCAATGCCAAAAAGTTTAAAAGGCTTTTCACGCTTTTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
*
56428 CGTTTTCCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * *
56493 ACAAGTCTTTAAATCAATTGCGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTCTT
196 ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
* * * * * * *
56558 GGCGCCAAAAATCATGCACAACTGAGCCGGGGCCCAGTAAAACCTTTTTAACAAAAAACTGTGAT
261 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
56623 GGATAG
326 GGATAG
* *
56629 TACAACGATTTCAGCTAAAATTTTGCAAAAAATGAGCCGAAAAATTTTTCTTCAATTTTTTGACA
1 TAC-ACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACA
* * * * *
56694 AAATAGTCATAAAAAATATATAATTCAATGCCAAAATGATTGAAAGGCTTTTCACGCTTTTTAAT
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGC-TTCTAAT
** * * * * *
56759 ATTTTTTTTCCTATTTTTTTGAATTAATTACAAATA-AAAACGAAACAAGATTCTGATACTCCTA
129 ATCGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTA
* * * * * *
56823 AAAACAAATCCTTAAATCCAA-TGTGACTGAGATTTGGTTAGATGAATATATATATATTTCAACG
193 AAAACAAGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATG-A-ATATAGATATTTCAAGG
* * * * *** * *
56887 AGTCTTGGCGCCAAAGATTATGCAAAACTGTGCCAGGG-CCCGGAACGTGTTTTTGGCGAAAAAC
255 AGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAAC
* *
56951 TGTGATGGTTAG
320 CGTGATGGATAG
* * * * *
56963 TACACAATTTCGGCTAAAATTTTTCAAAAACTGAGCCGAAATATTTTTCCTTAAATTTTTTGACA
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCC-TCAATTTTTTGACA
* * ** ** * *
57028 AAATAGTTGTAAAAGTTATATAATTCAATTTCAAAAAGATTAAAATGCTTTTCACGCTTTTAATA
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* *
57093 TCGTTTTTCCTATTTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGGTGTTCGT-A
130 TCGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAA
* * *
57157 AAA-ATGTCTTTAAATCAATTGTGCCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAATC
194 AAACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
** * *
57221 TCAGCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAAGACCTTTTTAGCCAAAAACCGTG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
57286 ATGGATAG
324 ATGGATAG
* * * *
57294 TACACGATTTCAGCTGAAATTTTGCAAAAACTGAGACGAAAAAGTTTTCCTTAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* ** * *
57359 AATAGTCGGAAAAAGCATATAATTCAAAGCCAAAATGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* *
57424 TGTTTTTCCTACTTTTTTGAATTAATTTCTAA-A-AAAACGAAACAAGATTCTGATGCTCGTAAA
131 CGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * * * * * * *
57487 AACAAATCCTTAAATCCAA-TATGACTGAGATTTGGTTAGTTGAATATATATATTTCAACGAGTC
195 AACAAGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
* * * * ** *** * *
57551 TTGGCGCGAAAAATTATGCAAAACTGTGTCAAGG-CCCGGAACGTGTTTTTAGCCAACAACTGTG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
* * * *
57615 GTTGTTAA
324 ATGGATAG
* * *
57623 TACACGATTT-TGCCTAAGATTTTGCAAAAACTGA-CCGGAAAAAGTTTTCCTCAATTTTTTGAC
1 TACACGATTTCAG-CTAAAATTTTGCAAAAACTGAGCC-GAAAAATTTTTCCTCAATTTTTTGAC
* * * * *
57686 ACAATAATCATAAAAATTATATAGTTCAATGCC------A--AAAA------T--CGTTTCTAAT
64 ACAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAAT
*
57735 ATCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCCGATGCTCGTAA
129 ATCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAA
* *
57800 AAACATGTCTTTAAATCAATTGTGGCTGAGATTTGATTTGATGAATATAGATATTTCAAGGAGTC
194 AAACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
* * *
57865 TTGACGCCAAAAAATCATGCAAAACTGAGCCGGAGCCCCGGAATACCTTTTTAGCCAAAAACC--
259 TTGGCGCC-AAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGT
57928 G-T-GA-AG
323 GATGGATAG
* * *
57934 GACACGATTTTCAGCTAAAATTTTGCAAAAATTGAGCCGAAAAATTTTTCTTCAATTTTATTGAC
1 TACACGA-TTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTT-TTGAC
* *
57999 ACAATAGTCATAAAAAATATATAATTCAATGCCAAAACA-ATTAAAAGGATTTTCACGCTTCTAA
64 ACAATAGTCGTAAAAAATATATAATTCAATGCCAAAA-AGATTAAAAGGCTTTTCACGCTTCTAA
* * * *
58063 TATTGTTTTTCCTATTTTTTTAATTAATTTCTAATAAAAATCGAAATAAGATTCTGATGCTCGTA
128 TATCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTA
* * * * * * * *
58128 AAAACAAATCCTTAAATCCAA-TGAGACTGAGATTTGGTTAGATGAAAATATATATTTCAACGAG
193 AAAACAAGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAG
* * * * *** **
58192 TCTTGGGGCCAAAAATTATGCAAAACTGTGCCAGGG--CCGGAACGTGTTTTTAGCCAAAAACTA
257 TCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCG
* *
58255 TGATGGTTAA
322 TGATGGATAG
* * **
58265 TACATGATTTCGGCTAAAATTTTGCAAAAACTGAGCTCGAAAAATTTTTCCTTTATTTTTTGACA
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGC-CGAAAAATTTTTCCTCAATTTTTTGACA
* * *
58330 CAATAATCGTAAAAATTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCATGCTTCTAATA
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * * *
58395 TCGTTTTTCCTATTTTTGGAATTAATTTCTAATACAAATCGAAAGAAGATTTTGATGCTCGTAAA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * * *
58460 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTATGATGAATATAGATATTTTAGGGGGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * *
58525 TGGCGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCAGAGCACCTTTTTAGCCAAAAACC--G-
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
58587 T-GAT-G
325 TGGATAG
* * * *
58592 TACACGATTTCAGATAAAATTTTGC-AAAACTGAGTC-AAAAAGTTTTTTCTCAATTTTTTGACC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAA-TTTTTCCTCAATTTTTTGACA
* * * * *
58655 CAATAGTTGTAAGAAATATATAATTTAATGCCAAAATGATTAAAAGGCATTTCACGCTTCTAATA
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * * *
58720 TCATTTTTCCTATTTTTGGAATTAATTTCTAAAAGAAATCGAAACAAGATTCTGATGCTCATAAA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * *
58785 AAC-AGATCTTTAAATCAATTGTGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGCAGTC
195 AACAAG-TCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
* * * * * * *
58849 TTGGTGCCAAAACTCATGGAAAACTGAGTCGGGGCCTCAGAACACCTTTTTAACCAAAAACCGTG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
*
58914 AAGGATAG
324 ATGGATAG
* *
58922 TACAAGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCTTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * * * *
58987 AATAGTCGTAAAAAATATATATTTCAATGCCAAAACA-ATTAAAAGGATTTTTACGCTACTAATG
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAA-AGATTAAAAGGCTTTTCACGCTTCTAATA
* * *
59051 TTGTTTTTCCT-TTTTTT-AATTAATTTCTAATAAAAATCGAAATAAGATTCTGATGCTCGT-AA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * * * * * ** * * ** *
59113 AACAAATCCTTAAATCCAA-TGAGACTGACATCTGGTCAGATGAAAATATATATTTCAACAAGTA
195 AACAAGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
* * * * *** **
59177 TTGGTGCCAAAAATTATGCAAAACTGTGCCAGGG-CCCGGAACGTGTTTTTAGCCAAAAACTATG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
*
59241 ATGGCTAG
324 ATGGATAG
* * ** * *
59249 TACATGATTTCGGCTAAAATTTTGCAAAAACTGAGCTCGAAAAATTTTTCCTTTATTTTTTAACG
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGC-CGAAAAATTTTTCCTCAATTTTTTGACA
* * * *
59314 CAATAATCGTAAAAATTATACAATTCAATGCCAAAAAGATTAAAAGGCTTTTAACGCTTCTAATA
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* *
59379 TCGTTTTTCCTATTTTTGGAATTAATTTCTAATAGAAATCGAAACAAGATTTTGATGCTCGTAAA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * * *
59444 AATAAGTCTTTAAATTAATTGTGGCTGAGATTTGGTATGATGAATATAGATATTTCAGGGAGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * * *
59509 TGGCGCCAAAAGTCATGCAAAACTGAGCCGGAGCCCCGGAGCACATTTTTAGCCAAAAACC----
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
59570 ------G
325 TGGATAG
* * * *
59571 TACACGATTTCAGCTAAAATTTTGC-AAGACTGAGCTGAAAATTTTTTCCTCAATTTATTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
** * * *
59635 AATAGTCGTAAGGAATATATAATTCAATGCCAAAATGATTAAAAGGCTTTTCACGCTTTTAAAAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * * *
59700 CGTTTTTCCTCTTTTTGGAATTAATTTCTAATAGAAATCGGAACAAGATTCCGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* *
59765 AC-AGATCTTTCAATCAATTGTGGCTGAGGTTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
196 ACAAG-TCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * * * * *
59829 TGGAGCCAAATATCGTGCAAAACTGAGCCGGAGCCCTGGAACACTTTTTTAGCCAAAAACCGTGA
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
59894 T-G---G
325 TGGATAG
* * *
59897 ---AC----TCGGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCTTGAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* *
59955 AATAGTCGTAAAAAGTATATAATTCAATGCCAAAATGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * *
60020 TGTTTTTCCTACTTTTTGAATTAATTTCTAATAAAAATCGAAACAAGATTCTGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * * * * * * *
60085 ACAAATCCTTAAATCCAA-TGTGACTGAGATTTAGTTAGATGAATATATATGTTTCAACGAGTCT
196 ACAAGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * * * ** ** **** * **
60149 AGGCGCCAAAAATTATTCAAAACT-ATGTCACGG-CCAAGAACGTGATTTTAGCCAACAACTATG
260 TGGCGCCAAAAATCATGCAAAACTGA-GCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
* *
60212 ATGGTTAT
324 ATGGATAG
* * * *
60220 TACACGATTTCGGCTAAAATTTTTCAAAAACTGAGCC-AAAATATTTTTCCTTATTTTTTTGACA
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAA-ATTTTTCCTCAATTTTTTGACA
* * * * * *
60284 CAATAGTTGTAAAAATTATATAATTCAATTCCAAATAGATTAAAATGCTTTTCACGCTTTTAATA
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * * *
60349 TCGTTTTTCATATTTTTTTTGAATTAATTTCTAATAAAAATCG-AACAAAGATTGTGGTGCTCGT
130 TCGTTTTTCCTA--TTTTTTGAATTAATTTCTAATAGAAATCGAAAC-AAGATTCTGATGCTCGT
* * *
60413 AAAAA-TA-TCTTTAAATCAATTGTGGCTGAGATTTGGTTTGAAGAATATAGATATTTCAAGGAA
192 AAAAACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAG
* * * *
60476 TCTTGGCGCCAAAAATCATGCAAATCTGAGTC-GGGCCCCGGAAGACCATTTTAGCCAAAAACC-
257 TCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCG
60539 -G-T-G--A-
322 TGATGGATAG
* * * *
60543 T---CGATTTCAGCTGAAATTTGGCAAAAACTGAGCCAAAAAAGTTTTCCTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * *
60605 AATAGTCGTAAAAAGTA-AAACATTCAATGCCAAAATGATTAAAAGGCTTTTCACGCTTCTAATA
66 AATAGTCGTAAAAAATATATA-ATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * * *
60669 T--TTTTTCCCATTTTTTTGAATTAATTTCTAATAAAAAACGAAACAAGATTTTGATGCTCGTAA
130 TCGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAA
* * * * * *
60732 AAACAAAT-TCTTAAATCCAA-TGCGACAGAGATTTGGTTAGATGAATATAGATATTTCAACGAG
194 AAACAAGTCT-TTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAG
* * * * * *** * *
60795 TCTTGGCACCAAAGATTATGCAAAACTGTGCCAGGG-CCCGGAACGTGTTTTTAGTCAAAAACTG
257 TCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCG
60859 TGATGG-TAG
322 TGATGGATAG
* * *
60868 TACATGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTTAATTTTTTGACAA
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * * *
60933 AATAGTTGTAAAAATTATATAATTCAATTCCAAAAAGATTAAAAGGC-TTTCACGCTTTTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
*
60997 CATTTTTCCTATTTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATT-TGATGCTCGTAAA
131 CGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* *
61061 AACAAGTCTTTAATTCAATTGTGGCTGAGATTTGGTTTGATGCATATAGATATTTCAAGGAGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * ** *
61126 TTGCGCCAAAAATCATGCAAAACTGAGACGGAACCCCGGAACACCTTTTCAGCCAAAAACCGTGA
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
* *
61191 TGAATAA
325 TGGATAG
* * * *
61198 TACATGATTTCAGCTAAAATTTTCCAAATACTGAGCCGAAAAGTTTTTCCTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
*
61263 AATAGTCGTAAAAAATATATTATTCAATGCCAAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
66 AATAGTCGTAAAAAATATATAATTCAATGCC-AAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * *
61328 TCGTTTTTCCGATTTTTTTAATTAATTTCTTATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
** * * *
61393 AACGCGTCTTTAAATCAATTGTGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGAAGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * * *
61458 TGGTGCCATATATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGTCAAAAACC---A
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
61520 T-G--A-
325 TGGATAG
* * * *
61523 -ACACGATTTCGGCTAAAATTTTGCAAAAATTGAGCGGAAAAATTTTTCCTCAATTTTTTCACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * * *
61587 AATACTCGTAACAAATATATAATTCAATGCCAAAAAGATTAAAATGTTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* *
61652 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGATACAAGATTCTGATACTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* *
61717 ACAAGTCTTTAAATCAATTGTGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTCTT
196 ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
** * * * * * * * *
61782 GATGCCAAAAATCATTCAAAACTGAGTCAGGGCACCAGAAAACTTTTTTAGCCAACAACCGT-A-
261 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
*
61845 --A-CG
326 GGATAG
* * * *
61848 TACGCGATTTC-GACTAAAATTTTGCAAAAACTTATCCGATAAATTTTTCCTCAATTTTGTTGAC
1 TACACGATTTCAG-CTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTT-TTGAC
* * * *
61912 ACAATAATCGTAAAAATTATATAATTCAATTCTAAAAAGATTAAAAGGCTTTTCACGCTTCTAAT
64 ACAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAAT
* *
61977 ATCGTTTTTCCTATTTTTGGAATTAATTTTTAATAGAAATCGAAACAAGATTCTGATGCTCGTAA
129 ATCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAA
* * * *
62042 AAACAGGTCTTTAAATCAATTGTCGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTC
194 AAACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
* * * *
62107 TTGGCGCCAAAAATCATTCAAAACTGAACCGGGGCCTCAGAACACC-TTTTAGCCAAAAACCGTG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
62171 AT-G--AG
324 ATGGATAG
* * * * * * *
62176 TACACGATTTCGGATAAAATTTTACAAAAATTGAGTCGAAAAATTTTTCCTCATTTTTTTCACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
*
62241 AATAGTCGTAAAAAATATATAATTCAA-GCCCAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * *
62305 CGCTTTTCTTATTTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGGTT-TGATGCTCGTAAA
131 CGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * *
62369 AACAAGTCTTTAATTCAATTGTGCCTGAGATTTGGTTTGATGCATATAGATATTTCAAGGAGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * ** * *
62434 TTGCGCCAAAAATCATGCAAAACTGAGTCGGAACCCCAGAACACCTTTTCAGCCAAAAACCGTGA
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
* *
62499 T-GCTAA
325 TGGATAG
* * *
62505 TACACGATTTCAGCTAAAATTTTCCAAATACTGAGCCGAAAAGTTTTTCCTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
*
62570 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAATATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* ** * * *
62635 CGTTTTTCCTATTTTTTTAAACAATTTCTTATAGAAATCGAAACAAGATT-TCGATACCCGTAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCT-GATGCTCGTAAA
* * * * *
62699 AACACGTTTTTAAATAAATTGTGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * * *
62764 TGGCACCATAAATCATGCAAAACTGTGTCC-GGGCCCCGGAACACCTTTTTAGCCAAAAACAGTG
260 TGGCGCCAAAAATCATGCAAAACTGAG-CCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
62828 ATGGATAG
324 ATGGATAG
* * * * * * * *
62836 TACAGGATTTCGGTTAAAATTATGCAAAAATTGAGTCGAAAATTTTTTTCCTCAATTTTTTCACA
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAA-ATTTTTCCTCAATTTTTTGACA
* * **
62901 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGACTTTTTACGAATCTAATA
65 CAATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * * *
62966 TCGTTTTTCCTATTTTTGGAATTAATTTCTAAAAGAAATCGAAACAAGATTCTGAAGCTTGTAAA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * *
63031 AACAGGTCTTTAAATCAATTGTGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* * *
63096 TGGCGCCAAAAATCATTCCAAACTGAGTCGGGGCCCCGGAACACCTTTTTAGCCAAAAACC--G-
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
63158 T-GAT-G
325 TGGATAG
* * * * * *
63163 TACACGATTTCGGATAAAATTTTGCAAAAATTGAGTCGAAAAATTTTTCCTCATTTTTTTCACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
*
63228 AATAGTCG-------TATATAATTCAATGCCAAAAAGATAAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* *
63286 CGTTTTTTCTATTTTTGGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * *
63351 AC-AGATCTTTAAATCAATTGTCGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTCT
196 ACAAG-TCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
* ** ** * *
63415 TTGCGCCAAAAATCATGCAAAAGAGAGCCGGAACCCCAGAACACCTTTTCAGCCAAAAACCGTGA
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
*
63480 TGGATAA
325 TGGATAG
* * * *
63487 TACAAGATTTCAGCTAAAATTTTCCAAATACTGAGCCGAAAAGTTTTTCCTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* *
63552 AATAGTCGT-AAAAATATATAATTAAATGCCAAAAAGATTAAAAGGCTTTTCACTCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * * *
63616 CTTTTTTCCTATTTTTTTTTTAAATTATTTTCTAATA-AAATACGAAACAAGATTTTGATGCTCG
131 CGTTTTTCCTA----TTTTTTGAATTAATTTCTAATAGAAAT-CGAAACAAGATTCTGATGCTCG
* * * * * * * *
63680 TAAAAACAAATCCTTAAATCCAA-TGTGACTGAGATTTGATTAGATGAATATATATATTGCAACG
191 TAAAAACAAGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGG
* * * * * *** *
63744 AGTCTTGGCGCCAGAGATTATGCAAAACTGTGCCAGGG-CCCGGAACGTGTTTATAGCCAAAAAC
255 AGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAAC
** *
63808 TTTGATGGTTAG
320 CGTGATGGATAG
* * *
63820 TACATGATTTCGGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTTAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
** ** * * * *
63885 AATAGTTTTAAAATGTATATAATTCAATTCCAAAAAGATTAAAAGACTTTTCACGTTTTTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* *
63950 CGCTTTTCCTATTTTTTGAATTAATTTCTAATAAAAATCGAAACAAGATT-TGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * * *
64014 ACAAGTCTTTAATTCAACTGTGGCTGAGATTTGGTTTGATGCATATAGATATCTCAAGGAGTCTT
196 ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
* * * ** * *
64079 TGCACCAAAATTCATGCAAAACTGAGCCGGAACTCCGGAACACCTTTTCAGCCAAAAACCGTGAT
261 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
*
64144 GGATAA
326 GGATAG
* * * * *
64150 TACACGATTTCTGCTAAAATTTTCCAAATACTGAGCCGAATAGTTTTTCCTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
*
64215 AATAGTCGTAAAAAATATATTATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * *
64280 CGTTTTTCCTAATTTTGGAATCAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* *
64345 ACACGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGCATATAGATATTTCAAGGAGTCTT
196 ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
* ** * *
64410 GGCGCCATAAATCATGCAAAACTGAGCCGGAACCCCGGAGCACCTTTTCAGCCAAAAACCGTGAT
261 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
*
64475 GGATAA
326 GGATAG
* * *
64481 TACACGATTTCAGCTAAAATTTTCCAAATACTGAGCCG-AAAATTTTTCCTCAATTTTTTCACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* *
64545 AATAGTCTTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTTTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * *
64610 CTTTTTTCCTAATTTTTTGAGTTAATTTCTAATAGAAATCGAAACAAGATTCTGGTGCTCGT-AA
131 CGTTTTTCCT-ATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAA
* * *
64674 AA-ATGTCTTTAAATCAATTGTGGCTTAGATTTGGTTTGATGAATATAGATATTTCAAGGAATCT
195 AACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT
*** * * * *
64738 CAACGCCAAAAATCATACAAAACTGAGTCGGGGTCCCGGAAGACCTTTTTAGCCAAAAACCGTGA
260 TGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGA
64803 TGGATAG
325 TGGATAG
* * *
64810 TACACGATTTCAGCTGAAATTTTGC-AAAACTGAGCCAAAAAAGTTTTCCTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * *
64874 AATAGTCGCAAAAAGTATATAATTCAATGCCAAAATGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * * *
64939 TGTTTTTCCTATTTTTTGAATTAATTTCTAA-A-AAAACGAAACAAGATTCTGATGCCCGTTAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * * * *
65002 ACAAAT-TCTTAAATCCAA-TGTGTCTGAGATTTGGTTAGATGAATATATATATTTCAACGAGTC
196 ACAAGTCT-TTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
* * * * *** *
65065 TTGGCGCCAAAAATTATGCAAAACTGTGTCAGGG-CCCGGAACGTGTTTTTAGCCAACAACCGTG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
* * *
65129 ATTGTTAA
324 ATGGATAG
* * *
65137 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATATTTCCTCAATTTTTAGATAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* *
65202 AATAATCGTAAAAATTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * *
65267 CATTTTTCCTATTTTTGGAATTAATTTCTAATAGAAATCGAAACAAGATTTTGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * * * * *
65332 ATAGGTCTTT-AATCAATTGTGGCTGAGGTTTGGTTTGACGCATATAGATATTTCAAGCAGTCTT
196 ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
** * * * *
65396 GTAGCCAAAAATTATGCAAAACTGAGCCGGGGGCTCGGAACACCTTTTTATCCAAAAACCGTGAT
261 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
* *
65461 --TTCG
326 GGATAG
* *
65465 TACACGATTTCAGCTAAAATTTTGCAAAACCTGAGCCGAAAAATTTTTCTTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * * * *
65530 AATAGTCGTAAAAAATAAATAAATCAATCCCAAAACA-ATTAAAAGGATTTTTCACGTTTCTAAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAA-AGATTAAAAGG-CTTTTCACGCTTCTAAT
* * * * *
65594 ATTGTTTTTCCTATTTTTTTGAATTAATTTCTAAAAAAAATCTAAATAAGATTCTGATGCTCGT-
129 ATCGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTA
* * * *
65658 AAATCACA-TCCTTAAATCCAA-TGTGACTGAGATTTGG-TT-A-G-AT-T--ATATTTCAACGA
193 AAAACA-AGTCTTTAAAT-CAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGA
* * * *
65714 GTCTTGGCGCCAAAAATTATGCAAAACTGTGCCAGGG-CCC-GAA-ACGTGTCTTTAGCCAAAAA
256 GTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCT-T-TTTAGCCAAAAA
* *
65776 CTGTGATGGTTAG
319 CCGTGATGGATAG
* * * * *
65789 TATATGATTTCAGTTAAAATTTTGCAAAAACTGAGCCGAAAATTTTTTCCTTAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* * * * *
65854 AATAGTTGT-CAAAATCATATAATTCAATTCCAAAAAGATTAAAAGGTTTTTCACGCTTTTAATA
66 AATAGTCGTAAAAAAT-ATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATA
* * * *
65918 TCGTTTTTCTTATTTTTTTAATTAA-TTCTAATATAAACCGAAACAAGACTT-TGATGCTCGTAA
130 TCGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGA-TTCTGATGCTCGTAA
** * *
65981 AAACATTTCTTTAAATCAATTGTGGCTGAGGTTTGGTTTGATGCATATAGATATTTCAAGGAGTC
194 AAACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTC
*
66046 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCGGAACACCTTTTTAGCCAAAAACCGTG
259 TTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTG
66111 ATGTATGATAG
324 ATG---GATAG
* * * * *
66122 TACACGATTTCTGCTAAAATTTTGCAAAAATTGAGTCGAAAAATTTTTCCTCAACTTTTTCACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* *
66187 AATAGTCATAAAAAATGTATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
66 AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
* * ** *
66252 CGTTTTTCCTATTTTTGGGATTAATTTCTAATAGAAATTAAAACAAGAGTCTGATGCTCGTAAAA
131 CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
* * * * *
66317 ACAGGTCTTTAAATCAATTGTGGCTGAGGTTTGGCTTGATGCATATAGATATTTCAAGCAGTCTT
196 ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
* * *
66382 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCTCGGAACACCTATTTAACCAAAAACCGTGAT
261 GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
66447 GGATAG
326 GGATAG
*
66453 TACACGATTTCAGCTAAAA---T--------TGAGCCGAAAAATTTTTCTTCAATTTTTTGACAC
1 TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
* *
66507 AATAGTTGTAAAAAATATATAATTCAATGCCCAAACA-ATTAAAAGGCTTTTCACGCTTCTAACT
66 AATAGTCGTAAAAAATATATAATTCAATG-CCAAAAAGATTAAAAGGCTTTTCACGCTTCTAA-T
* * * * * * *
66571 -TTGTTTTTCCTATTTTTTTAAACTGATTTCTAATAAAAATCGAAATAAGATTCTGATGCTTGTA
129 ATCGTTTTTCCTA-TTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTA
66635 AAA
193 AAA
66638 CAAATCCTTA
Statistics
Matches: 8579, Mismatches: 1211, Indels: 448
0.84 0.12 0.04
Matches are distributed among these distances:
311 7 0.00
312 62 0.01
313 64 0.01
314 85 0.01
315 21 0.00
316 21 0.00
317 49 0.01
318 13 0.00
319 350 0.04
320 673 0.08
321 112 0.01
322 86 0.01
323 287 0.03
324 251 0.03
325 247 0.03
326 311 0.04
327 520 0.06
328 781 0.09
329 977 0.11
330 1492 0.17
331 629 0.07
332 629 0.07
333 391 0.05
334 469 0.05
335 52 0.01
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Consensus pattern (331 bp):
TACACGATTTCAGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAATTTTTTGACAC
AATAGTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAT
CGTTTTTCCTATTTTTTGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGTAAAA
ACAAGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTT
GGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACCGTGAT
GGATAG
Found at i:66668 original size:16 final size:16
Alignment explanation
Indices: 66647--66680 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
66637 ACAAATCCTT
66647 AAAATTATGCAAAACA
1 AAAATTATGCAAAACA
66663 AAAATTATGCAAAACA
1 AAAATTATGCAAAACA
66679 AA
1 AA
66681 TCCTTAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (16 bp):
AAAATTATGCAAAACA
Found at i:77023 original size:2 final size:2
Alignment explanation
Indices: 77016--77043 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
77006 TTAAACTGGG
77016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77044 TAACTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77236 original size:19 final size:20
Alignment explanation
Indices: 77212--77267 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
77202 GTTTGGTAAA
77212 TGTACAGATGAGATTA-CAC
1 TGTACAGATGAGATTAGCAC
* *
77231 TGTACAGATTAGATTAGGTAC
1 TGTACAGATGAGATTA-GCAC
*
77252 TGTACAAATGAGATTA
1 TGTACAGATGAGATTA
77268 TTAGAGCAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (20 bp):
TGTACAGATGAGATTAGCAC
Found at i:78615 original size:29 final size:30
Alignment explanation
Indices: 78583--78644 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
78573 AAGAGAATGA
* * *
78583 GAATTAA-TTTTAAAAGTACAATGATTTGG
1 GAATTAATTTTTAAAACTACAAGGATTAGG
78612 GAATTAATTTTTAAAACTACAAGGATTAGG
1 GAATTAATTTTTAAAACTACAAGGATTAGG
78642 GAA
1 GAA
78645 AAACCTCTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.34
Consensus pattern (30 bp):
GAATTAATTTTTAAAACTACAAGGATTAGG
Found at i:80981 original size:13 final size:13
Alignment explanation
Indices: 80963--80987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80953 TTCAATATTC
80963 TAAATATTATTTA
1 TAAATATTATTTA
80976 TAAATATTATTT
1 TAAATATTATTT
80988 GTATTTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAATATTATTTA
Found at i:84351 original size:16 final size:16
Alignment explanation
Indices: 84302--84351 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
84292 AGGGCTAATT
84302 AAATTGTATAGAAT-A
1 AAATTGTATAGAATAA
* *
84317 AAA-TGT-TAGAAGATT
1 AAATTGTATAGAATA-A
84332 AAATTGTATAGAATAA
1 AAATTGTATAGAATAA
84348 AAAT
1 AAAT
84352 GTCTAAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
13 5 0.19
14 3 0.11
15 6 0.22
16 7 0.26
17 6 0.22
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.32
Consensus pattern (16 bp):
AAATTGTATAGAATAA
Found at i:89162 original size:9 final size:9
Alignment explanation
Indices: 89150--89175 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
89140 ATATTTTCCA
89150 TATCATCAC
1 TATCATCAC
89159 TATCATCAC
1 TATCATCAC
89168 TATCATCA
1 TATCATCA
89176 TCATGCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (9 bp):
TATCATCAC
Found at i:90766 original size:30 final size:31
Alignment explanation
Indices: 90704--90766 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
90694 ATGGTTCAAA
*
90704 TTTTGATAAATTCAGTTCTCAAAAAAATTTT
1 TTTTGATAAATTCAATTCTCAAAAAAATTTT
*
90735 TTTTGATAAATTCAATTACT-AAAAAGATTTT
1 TTTTGATAAATTCAATT-CTCAAAAAAATTTT
90766 T
1 T
90767 CACCGAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (31 bp):
TTTTGATAAATTCAATTCTCAAAAAAATTTT
Found at i:97237 original size:23 final size:22
Alignment explanation
Indices: 97209--97261 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
97199 TAGTAATTTT
**
97209 TATAATTAAATATATGTTATATA
1 TATAATTAAATATATAATA-ATA
*
97232 TATAATTACATATATAATAATA
1 TATAATTAAATATATAATAATA
97254 TATAATTA
1 TATAATTA
97262 TTAAACGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
TATAATTAAATATATAATAATA
Found at i:97246 original size:12 final size:11
Alignment explanation
Indices: 97209--97261 Score: 56
Period size: 10 Copynumber: 4.7 Consensus size: 11
97199 TAGTAATTTT
97209 TATAATTAA-A
1 TATAATTAATA
*
97219 TATATGTTATATA
1 TATA-ATTA-ATA
97232 TATAATTACATA
1 TATAATTA-ATA
97244 TATAA-TAATA
1 TATAATTAATA
97254 TATAATTA
1 TATAATTA
97262 TTAAACGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
10 12 0.33
11 7 0.19
12 12 0.33
13 5 0.14
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (11 bp):
TATAATTAATA
Found at i:101457 original size:31 final size:31
Alignment explanation
Indices: 101409--101490 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
101399 ACATTGCCTT
*
101409 GCCACGTGGTATTTTGGTCCAACATGGCATC
1 GCCACGTGGCATTTTGGTCCAACATGGCATC
* ** *
101440 GCCATGTGGCATTTTGGTCCAATGTGGCATT
1 GCCACGTGGCATTTTGGTCCAACATGGCATC
*
101471 GCCACGTGACATTTTTGGTC
1 GCCACGTGGCA-TTTTGGTC
101491 TTCAGCAATA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 35 0.81
32 8 0.19
ACGTcount: A:0.17, C:0.23, G:0.27, T:0.33
Consensus pattern (31 bp):
GCCACGTGGCATTTTGGTCCAACATGGCATC
Found at i:104433 original size:20 final size:21
Alignment explanation
Indices: 104393--104434 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
104383 TTTTGTTTCC
* *
104393 AAAAACATAAAATTGACAACA
1 AAAAACAGAAAATAGACAACA
104414 AAAAACAGAAAATAGA-AACA
1 AAAAACAGAAAATAGACAACA
104434 A
1 A
104435 TACCAAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.71, C:0.12, G:0.07, T:0.10
Consensus pattern (21 bp):
AAAAACAGAAAATAGACAACA
Found at i:115574 original size:6 final size:6
Alignment explanation
Indices: 115562--115605 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
115552 CCTCCCTCTC
* * * *
115562 CCCCTT CCTCTT CCCCTG CCTCTT CCCCTT CCCCTC CCCCTT CC
1 CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT CC
115606 TCTCCCTCCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.66, G:0.02, T:0.32
Consensus pattern (6 bp):
CCCCTT
Found at i:115577 original size:12 final size:12
Alignment explanation
Indices: 115556--115611 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
115546 GCCAAACCTC
115556 CCTCTCCCCCTT
1 CCTCTCCCCCTT
* *
115568 CCTCTTCCCCTG
1 CCTCTCCCCCTT
*
115580 CCTCTTCCCCTT
1 CCTCTCCCCCTT
*
115592 CCCCTCCCCCTT
1 CCTCTCCCCCTT
115604 CCTCTCCC
1 CCTCTCCC
115612 TCCACGATCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.00, C:0.66, G:0.02, T:0.32
Consensus pattern (12 bp):
CCTCTCCCCCTT
Found at i:115604 original size:18 final size:18
Alignment explanation
Indices: 115554--115605 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
115544 TAGCCAAACC
*
115554 TCCCTCTCCCCCTTCCTCT
1 TCCC-CTCCCCCTTCCCCT
* *
115573 TCCCCTGCCTCTTCCCCT
1 TCCCCTCCCCCTTCCCCT
115591 TCCCCTCCCCCTTCC
1 TCCCCTCCCCCTTCC
115606 TCTCCCTCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.00, C:0.65, G:0.02, T:0.33
Consensus pattern (18 bp):
TCCCCTCCCCCTTCCCCT
Found at i:118918 original size:61 final size:61
Alignment explanation
Indices: 118823--118943 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 61
118813 ATACCACTTG
*
118823 CCACTCGATCTAACCGGCAATACTATTTGTGCACTTGATCAAATCTCTATTTGTGCAAGTA
1 CCACTCGATCGAACCGGCAATACTATTTGTGCACTTGATCAAATCTCTATTTGTGCAAGTA
* * *
118884 CCACTTGATCGAACCGGTAATACTATTTGTGCACTTGATGAAATCTCTATTTGTGCAAGT
1 CCACTCGATCGAACCGGCAATACTATTTGTGCACTTGATCAAATCTCTATTTGTGCAAGT
118944 GAAGCTACAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (61 bp):
CCACTCGATCGAACCGGCAATACTATTTGTGCACTTGATCAAATCTCTATTTGTGCAAGTA
Found at i:124589 original size:18 final size:18
Alignment explanation
Indices: 124566--124626 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
124556 CTCACGGGCT
124566 TAATTAGTTTTGTATAAG
1 TAATTAGTTTTGTATAAG
** * *
124584 TAATTA-TCATGAAGTGATG
1 TAATTAGTTTTGTA-T-AAG
124603 TAATTAGTTTTGTATAAG
1 TAATTAGTTTTGTATAAG
124621 TAATTA
1 TAATTA
124627 TCATGAAGTG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 4 0.12
18 15 0.47
19 9 0.28
20 4 0.12
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (18 bp):
TAATTAGTTTTGTATAAG
Found at i:124607 original size:19 final size:19
Alignment explanation
Indices: 124583--124645 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
124573 TTTTGTATAA
124583 GTAATTATCATGAAGTGAT
1 GTAATTATCATGAAGTGAT
** * *
124602 GTAATTAGTTTTGTA-T-AA
1 GTAATTA-TCATGAAGTGAT
124620 GTAATTATCATGAAGTGAT
1 GTAATTATCATGAAGTGAT
124639 GTAATTA
1 GTAATTA
124646 CAATCAAGGC
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 4 0.12
18 9 0.27
19 16 0.48
20 4 0.12
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (19 bp):
GTAATTATCATGAAGTGAT
Found at i:124616 original size:37 final size:37
Alignment explanation
Indices: 124566--124645 Score: 160
Period size: 37 Copynumber: 2.2 Consensus size: 37
124556 CTCACGGGCT
124566 TAATTAGTTTTGTATAAGTAATTATCATGAAGTGATG
1 TAATTAGTTTTGTATAAGTAATTATCATGAAGTGATG
124603 TAATTAGTTTTGTATAAGTAATTATCATGAAGTGATG
1 TAATTAGTTTTGTATAAGTAATTATCATGAAGTGATG
124640 TAATTA
1 TAATTA
124646 CAATCAAGGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (37 bp):
TAATTAGTTTTGTATAAGTAATTATCATGAAGTGATG
Found at i:135791 original size:2 final size:2
Alignment explanation
Indices: 135786--135813 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
135776 GTGTAAGTAC
135786 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
135814 GACAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:139391 original size:32 final size:32
Alignment explanation
Indices: 139349--139451 Score: 111
Period size: 32 Copynumber: 3.2 Consensus size: 32
139339 TGCTGACGTG
*
139349 GCCACGTGGCAATTTTTCGTCTAACGAGGCAT
1 GCCACATGGCAATTTTTCGTCTAACGAGGCAT
* * *
139381 GCTACATGGCAATTTTTCGTCTGACGTGGCAT
1 GCCACATGGCAATTTTTCGTCTAACGAGGCAT
* * *
139413 GCCACGTGGCAACTTTTT-GTCTGAC-ATGGTAT
1 GCCACATGGCAA-TTTTTCGTCTAACGA-GGCAT
139445 GCCACAT
1 GCCACAT
139452 CAGCATCATA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
32 55 0.92
33 5 0.08
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (32 bp):
GCCACATGGCAATTTTTCGTCTAACGAGGCAT
Done.