Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022469.1 Corchorus olitorius cultivar O-4 contig22502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68997

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22--50
12
2.4
12
100
0
58
34
6
6
51
1.55
1624--1713
25
3.6
25
77
14
112
32
13
13
41
1.83
1607--1731
51
2.5
51
100
0
250
33
11
12
42
1.79
5384--5413
2
15.5
2
93
6
53
50
0
0
50
1.00
8493--8523
2
15.5
2
100
0
62
48
0
0
51
1.00
11061--11284
66
3.4
66
84
7
244
32
20
12
35
1.89
11061--11284
22
10.2
22
73
13
176
32
20
12
35
1.89
16883--16959
35
2.4
31
81
16
79
66
3
14
15
1.40
16898--16970
35
2.1
35
92
0
119
61
5
16
16
1.52
19598--19632
15
2.3
15
90
0
52
45
28
5
20
1.73
20140--20262
42
2.9
42
95
0
210
37
17
13
30
1.89
34791--34817
12
2.2
12
100
0
54
85
14
0
0
0.61
44123--44222
6
16.7
6
84
4
85
0
18
36
46
1.49
44138--44210
9
7.8
9
74
8
56
0
16
34
49
1.46
44155--44222
3
22.7
3
87
0
73
0
22
33
44
1.53
59680--59733
26
2.1
26
96
0
99
44
22
14
18
1.86
62430--62484
22
2.5
22
97
2
103
58
9
10
21
1.60
64305--64377
29
2.5
29
76
10
78
19
16
17
46
1.84
64440--64525
33
2.6
33
88
0
127
19
22
36
22
1.96
64510--64549
13
3.1
13
88
0
62
22
25
30
22
1.99

Tables:   1

The End!