Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022473.1 Corchorus olitorius cultivar O-4 contig22506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75177

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10190--10228
12
2.9
15
71
28
50
53
5
5
35
1.45
10998--11038
20
2.0
20
95
0
73
31
4
14
48
1.65
11663--11689
11
2.5
11
100
0
54
44
18
7
29
1.77
11640--11705
33
2.0
33
85
5
89
42
19
6
31
1.76
13730--13757
6
4.7
6
100
0
56
17
14
35
32
1.90
28731--28767
19
1.9
19
88
0
56
29
16
13
40
1.86
39637--39684
22
2.2
22
100
0
96
22
29
12
35
1.91
40379--40455
31
2.4
32
84
2
102
35
25
20
18
1.95
42067--42316
124
2.0
124
98
0
482
22
12
21
44
1.85
46295--46423
48
2.8
44
85
11
179
3
34
13
48
1.62
46895--46946
25
2.1
25
100
0
104
40
3
25
30
1.73
54015--54191
98
1.8
98
89
0
282
37
3
17
41
1.68
64665--64700
1
36.0
1
94
0
63
97
2
0
0
0.18
72207--72232
13
2.0
13
100
0
52
53
0
23
23
1.46
75137--75177
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!