Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022474.1 Corchorus olitorius cultivar O-4 contig22507, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50216

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8525--8551
13
2.1
13
100
0
54
14
22
7
55
1.64
16005--16118
56
2.0
57
84
5
151
39
16
18
25
1.91
16828--16940
54
2.1
54
98
0
217
48
15
10
25
1.76
16828--16927
29
3.6
29
74
20
122
49
15
9
27
1.74
18472--18583
58
2.0
56
85
5
154
42
8
29
18
1.81
18627--18734
54
2.0
53
87
5
155
37
15
5
40
1.71
19712--19742
2
15.5
2
100
0
62
48
0
0
51
1.00
20367--20406
20
2.0
20
85
9
55
82
2
2
12
0.87
21764--21802
15
2.6
15
100
0
78
38
0
33
28
1.57
23035--23082
22
2.3
21
78
7
53
12
50
0
37
1.41
23617--23656
18
2.3
18
86
4
55
65
17
0
17
1.28
31415--31461
22
2.1
22
88
0
67
29
12
0
57
1.36
31813--31842
2
15.0
2
100
0
60
50
0
0
50
1.00
34826--34864
19
2.1
19
90
0
60
46
7
23
23
1.78
37877--37914
19
1.9
19
89
5
58
44
5
13
36
1.66
38012--38045
17
2.0
17
88
0
50
32
26
20
20
1.97
40687--40761
22
3.3
23
81
7
91
46
12
8
33
1.70
40702--40930
22
10.3
22
72
9
106
40
7
19
32
1.80
40687--40786
44
2.2
46
82
3
114
45
11
12
32
1.76
40725--40856
65
2.0
65
80
2
149
40
9
17
32
1.81
40833--40883
26
2.0
26
92
0
84
39
7
25
27
1.83
41087--41144
22
2.6
22
83
0
71
37
12
10
39
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41173--41228
22
2.5
23
82
8
55
32
8
14
44
1.76
41179--41229
22
2.3
21
83
9
66
33
11
13
41
1.81
43763--43807
2
22.0
2
82
13
56
46
2
2
48
1.26
46702--46748
23
2.0
23
95
0
85
40
4
14
40
1.66
49841--49878
2
19.0
2
100
0
76
50
0
0
50
1.00
49980--50026
21
2.2
21
84
3
58
19
4
12
63
1.44
49993--50037
21
2.0
22
91
8
74
20
2
13
64
1.38

Tables:   1

The End!