Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022475.1 Corchorus olitorius cultivar O-4 contig22508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84999
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:1259 original size:22 final size:22
Alignment explanation
Indices: 1199--1298 Score: 87
Period size: 22 Copynumber: 4.5 Consensus size: 22
1189 TTTAAATTAA
*
1199 ATATGAAATTTTGATAAGCTCGC
1 ATATGAAATTTTGATAATCTC-C
* * **
1222 -TTTAAAATTTCAATAATCTCC
1 ATATGAAATTTTGATAATCTCC
* *
1243 ATAGGAAATTTTGATAA-CTAC
1 ATATGAAATTTTGATAATCTCC
*
1264 ATTATGAAATTTTGATAATATCC
1 A-TATGAAATTTTGATAATCTCC
*
1287 TTATGAAATTTT
1 ATATGAAATTTT
1299 TTACGACCGT
Statistics
Matches: 59, Mismatches: 15, Indels: 7
0.73 0.19 0.09
Matches are distributed among these distances:
21 5 0.08
22 52 0.88
23 2 0.03
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (22 bp):
ATATGAAATTTTGATAATCTCC
Found at i:1336 original size:22 final size:22
Alignment explanation
Indices: 1248--1341 Score: 77
Period size: 22 Copynumber: 4.2 Consensus size: 22
1238 TCTCCATAGG
* *
1248 AAATTTTGATAACTACATTATG
1 AAATTTTGATAACTACCTTATA
*
1270 AAATTTTGATAA-TATCCTTATG
1 AAATTTTGATAACTA-CCTTATA
* *
1292 AAATTTT--TTACGACCGTACTATA
1 AAATTTTGATAACTACC-T--TATA
*
1315 AAATTTTGATAACTTCCTTATA
1 AAATTTTGATAACTACCTTATA
1337 AAATT
1 AAATT
1342 GAGATTTTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.07
21 4 0.07
22 34 0.59
23 10 0.17
24 1 0.02
25 5 0.09
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (22 bp):
AAATTTTGATAACTACCTTATA
Found at i:3906 original size:439 final size:431
Alignment explanation
Indices: 2915--3961 Score: 1223
Period size: 439 Copynumber: 2.4 Consensus size: 431
2905 TTTATTAAAA
* * * *
2915 TTTTTCT-TCTATTTGGCCGATTAAGGTAATTCAGTTGTCTATTAAAAGGTAATTTCCTGATTTA
1 TTTTTCTATTTATTT-GCCGATTAAGGTAATTCAGATGTCTATTAAAAGGTAATTTCATGATATA
* * * *
2979 CAACTTTCATGAATGA-TCCAAAAGCCAATTTTTATGTTTCAA-TTAAAAAAATGCTTC-CAAAA
65 CAACTTTC-TTAAAGACT-CAAAAGCAAATTTTTATGTTTCAATTTAAAAAAAAGCTTCTC-AAA
* * * *
3041 TTTTGTTGTTTCGATTGTCGGTCTATTTAATATCATATATAATTTTTAATCCACATGTCCGATTA
127 TTTAGTGGTTTCGATTGACGGTCTATTTAATATCAT-T-TAATTTTGAATCCACATGTCCGATTA
* * ** *
3106 AAGTTATGAAAGTGTCGGTTAGAAGGTTATTGCATGATCTACGTCTTTCATGAAGGACCCGAAAG
190 AAGTTATGAAAGTGTCGATTAAAAGGTTATTGCATGATCTACAACTTTCACGAAGGACCCGAAAG
* *
3171 CTAAATTTGATTTACGAGTTCATGAATGGCTCAAAAGAGAATTTTTATGTTGCAAGATCTCCAAC
255 CTAAATTTGATCTACGAGTTCATGAAGGGCTCAAAAGAGAATTTTTATGTTGCAAGATCTCCAAC
* * *
3236 AACAAACATTTTCTTATTTGGATTATTTTTCAAATGATCCTCATAATTTTGTACTTTATACTACT
320 AACAAACATTTTCTTATTTGGATTATTTATCAAATGATCCTCATAATTATCTACTTTATACTACT
*** * *
3301 TAGTCCTTTATTGATTCTATCTTGATTGATTTAACGCTTCGGTTTTT
385 TAGTCCTTTACAAATTCTATCTTGATCGATTTAACGCTTCAGTTTTT
* * * * *
3348 TTTTTCTATTTA--T-CCGATTAAGGTGATTAAGATGTCTATTAAAAGGTAATTTCATTATCTGC
1 TTTTTCTATTTATTTGCCGATTAAGGTAATTCAGATGTCTATTAAAAGGTAATTTCATGATATAC
* * * * *
3410 AACTTTCATTTAGGACTCAAAAGGAAATTTCTATGTTTAAATTTTTTTTTTTAAAAAAAAAGCTT
66 AACTTTC-TTAAAGACTCAAAAGCAAATTTTTATGTTTCAA--------TTT-AAAAAAAAGCTT
* * * *
3475 CTCAAATTTGGTGGTTTCGATTGCCGGTCTATTTAATAGCATTTAATTTTGGATCCACATGTCCG
121 CTCAAATTTAGTGGTTTCGATTGACGGTCTATTTAATATCATTTAATTTTGAATCCACATGTCCG
** *
3540 ATTAAAGTTATTCAAGTGTTGATTAAAAGGTTATTGCATGATCTACAACTTTCACGAAGGACCCG
186 ATTAAAGTTATGAAAGTGTCGATTAAAAGGTTATTGCATGATCTACAACTTTCACGAAGGACCCG
* * * *
3605 AAAGTTAAATTTGATCTACGAGTTTCATGAAGGGTTCAAAAGGGAATTTTTATGTTTCAAGATCT
251 AAAGCTAAATTTGATCTACGAG-TTCATGAAGGGCTCAAAAGAGAATTTTTATGTTGCAAGATCT
* * *
3670 TCATCAACAAACATTTTCTTATTTGGATTATTTATCAAATGA-CCTTCATACTTATCTACTTTAT
315 CCAACAACAAACATTTTCTTATTTGGATTATTTATCAAATGATCC-TCATAATTATCTACTTTAT
*
3734 ACTATTTAGTCCTTTACAAATTCTATCTT-ACTCGATTTAACGCTTCAAGTTTTT
379 ACTACTTAGTCCTTTACAAATTCTATCTTGA-TCGATTTAACGCTTC-AGTTTTT
* * * *
3788 TTTTCTTTGTTATATTTGCCCAATTAAGGTAATTCAGATGTATATTAAAAGGTAATTTCATGATA
1 TTTT-TCTATT-TATTTG-CCGATTAAGGTAATTCAGATGTCTATTAAAAGGTAATTTCATGATA
* * * * *
3853 TACAAGTTTCTTAAAAGACTCAAAAGCTAATTTTTATGTTTCAATTCT-AAAAAAGGCTTCTGAT
63 TACAACTTTCTT-AAAGACTCAAAAGCAAATTTTTATGTTTCAATT-TAAAAAAAAGCTTCTCAA
* * *
3917 ATTTAGTGGTTTCAATTGATGGTCTATTTAATATCATATAATTTT
126 ATTTAGTGGTTTCGATTGACGGTCTATTTAATATCATTTAATTTT
3962 TTATCTAGAT
Statistics
Matches: 516, Mismatches: 73, Indels: 46
0.81 0.11 0.07
Matches are distributed among these distances:
430 74 0.14
431 1 0.00
432 1 0.00
433 7 0.01
434 3 0.01
437 52 0.10
438 102 0.20
439 136 0.26
440 57 0.11
441 5 0.01
442 2 0.00
444 1 0.00
445 2 0.00
446 73 0.14
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (431 bp):
TTTTTCTATTTATTTGCCGATTAAGGTAATTCAGATGTCTATTAAAAGGTAATTTCATGATATAC
AACTTTCTTAAAGACTCAAAAGCAAATTTTTATGTTTCAATTTAAAAAAAAGCTTCTCAAATTTA
GTGGTTTCGATTGACGGTCTATTTAATATCATTTAATTTTGAATCCACATGTCCGATTAAAGTTA
TGAAAGTGTCGATTAAAAGGTTATTGCATGATCTACAACTTTCACGAAGGACCCGAAAGCTAAAT
TTGATCTACGAGTTCATGAAGGGCTCAAAAGAGAATTTTTATGTTGCAAGATCTCCAACAACAAA
CATTTTCTTATTTGGATTATTTATCAAATGATCCTCATAATTATCTACTTTATACTACTTAGTCC
TTTACAAATTCTATCTTGATCGATTTAACGCTTCAGTTTTT
Found at i:4301 original size:24 final size:25
Alignment explanation
Indices: 4273--4323 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
4263 AAAGAGTAAC
* *
4273 AATAAAATAAATAAGCAAGA-AAAT
1 AATAAAATAAAGAAACAAGATAAAT
*
4297 AATAAAATTAAGAAACAAGATAAAT
1 AATAAAATAAAGAAACAAGATAAAT
4322 AA
1 AA
4324 ATACTCCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.18
Consensus pattern (25 bp):
AATAAAATAAAGAAACAAGATAAAT
Found at i:5559 original size:52 final size:52
Alignment explanation
Indices: 5482--5587 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
5472 CAAAGCAATT
* *
5482 AAGTACTAATTCAAAGGATATGCACTTGAAAATCATCAAATTAAGCATAAAG
1 AAGTACTAATTCAAACGATAGGCACTTGAAAATCATCAAATTAAGCATAAAG
*
5534 AAGTACTAATTCAAACGATAGGCACTTGAAAATCATCAAATTAAGTATAAAG
1 AAGTACTAATTCAAACGATAGGCACTTGAAAATCATCAAATTAAGCATAAAG
5586 AA
1 AA
5588 TTAAGGTAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.25
Consensus pattern (52 bp):
AAGTACTAATTCAAACGATAGGCACTTGAAAATCATCAAATTAAGCATAAAG
Found at i:15735 original size:34 final size:35
Alignment explanation
Indices: 15661--15726 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
15651 AAGGTATATC
*
15661 ATGTATGATTTTTTGTTTCTATTTTAATAGTTAAG
1 ATGTATGATTTTTTGTTTCTATTTTAATAGCTAAG
*
15696 ATGTATGATTTTTT-TTTCTTTTTTAA-AGCTA
1 ATGTATGATTTTTTGTTTCTATTTTAATAGCTA
15727 TTATTGTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 4 0.14
34 11 0.38
35 14 0.48
ACGTcount: A:0.24, C:0.05, G:0.12, T:0.59
Consensus pattern (35 bp):
ATGTATGATTTTTTGTTTCTATTTTAATAGCTAAG
Found at i:16481 original size:112 final size:112
Alignment explanation
Indices: 16279--16504 Score: 389
Period size: 112 Copynumber: 2.0 Consensus size: 112
16269 TATAGTAGAA
*
16279 ATGTAGAATGACTTAATCACTTGATTCAATATTGGATTAGAATGGATTTGTTATTACTTGGTTTA
1 ATGTAGAATGACTTAATCACTTGATTCAATATTGGATTAGAATGGATATGTTATTACTTGGTTTA
* *
16344 AGTCTATGAAGCAAACTATTGATAGAATTAGTAATGTCTTCAAAAAG
66 AGTCTATGAAGCAAACTATTAATAGAATTAGTAAAGTCTTCAAAAAG
**
16391 ATGTAGAATGACTTAATCACTTGATTCCGTATTGGATTAGAATGGATATGTTATTACTTGGTTTA
1 ATGTAGAATGACTTAATCACTTGATTCAATATTGGATTAGAATGGATATGTTATTACTTGGTTTA
* *
16456 AGTCTATGAAGGAAACTATTAATAGATTTAGTAAAGTCTTCAAAAAG
66 AGTCTATGAAGCAAACTATTAATAGAATTAGTAAAGTCTTCAAAAAG
16503 AT
1 AT
16505 CATATATAGA
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 107 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (112 bp):
ATGTAGAATGACTTAATCACTTGATTCAATATTGGATTAGAATGGATATGTTATTACTTGGTTTA
AGTCTATGAAGCAAACTATTAATAGAATTAGTAAAGTCTTCAAAAAG
Found at i:17653 original size:30 final size:30
Alignment explanation
Indices: 17596--17652 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
17586 ATCTTACATG
17596 TTTTGAGGATAAAAATATTCATTTTTTTCT
1 TTTTGAGGATAAAAATATTCATTTTTTTCT
17626 TTTTGAGG-TAAAGAATATT-ATTTTTTT
1 TTTTGAGGATAAA-AATATTCATTTTTTT
17653 TTCCTAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (30 bp):
TTTTGAGGATAAAAATATTCATTTTTTTCT
Found at i:27516 original size:23 final size:23
Alignment explanation
Indices: 27490--27533 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
27480 TTAATAGCAT
27490 AATTAGGAGAAATGAATAAAAAG
1 AATTAGGAGAAATGAATAAAAAG
*
27513 AATTTGGAGAAATGAATAAAA
1 AATTAGGAGAAATGAATAAAA
27534 TTAGGAGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.20
Consensus pattern (23 bp):
AATTAGGAGAAATGAATAAAAAG
Found at i:28936 original size:19 final size:18
Alignment explanation
Indices: 28897--28939 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
28887 AGTGAAGAAG
28897 TTAGACAAATCAATCTGCA
1 TTAGACAAA-CAATCTGCA
28916 TTAGACAAA-AATCATGTCA
1 TTAGACAAACAATC-TG-CA
28935 TTAGA
1 TTAGA
28940 TTACAATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.18
18 2 0.09
19 16 0.73
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TTAGACAAACAATCTGCA
Found at i:30705 original size:16 final size:16
Alignment explanation
Indices: 30680--30720 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
30670 AAAAAATCAG
30680 TAAG-TCTTCAAGAA-A
1 TAAGTTCTTCAA-AACA
30695 TAAGTTCTTCAAAAGCA
1 TAAGTTCTTCAAAA-CA
30712 TAAGTTCTT
1 TAAGTTCTT
30721 GATCATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.26
16 7 0.30
17 10 0.43
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (16 bp):
TAAGTTCTTCAAAACA
Found at i:31836 original size:19 final size:20
Alignment explanation
Indices: 31797--31832 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
31787 ATTTTTAAGT
31797 AAAAATATAATATATAAATA
1 AAAAATATAATATATAAATA
31817 AAAAAT-TAATAT-TAAA
1 AAAAATATAATATATAAA
31833 ATAATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.25
19 6 0.38
20 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAATATAATATATAAATA
Found at i:40616 original size:15 final size:15
Alignment explanation
Indices: 40592--40674 Score: 94
Period size: 15 Copynumber: 5.1 Consensus size: 15
40582 AAAACCTGGG
*
40592 CCATAGCCACCACCA
1 CCATACCCACCACCA
40607 CCATACCCACTACCACCA
1 CCATA-CC-C-ACCACCA
40625 CCATACCCACCACCACCA
1 CCATA--C-CCACCACCA
*
40643 CCATACCCGCCACCA
1 CCATACCCACCACCA
40658 CCATACCCACCACCA
1 CCATACCCACCACCA
40673 CC
1 CC
40675 GTTGCCCCCA
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
15 29 0.48
16 2 0.03
17 1 0.02
18 24 0.40
19 3 0.05
20 1 0.02
ACGTcount: A:0.31, C:0.59, G:0.02, T:0.07
Consensus pattern (15 bp):
CCATACCCACCACCA
Found at i:40623 original size:18 final size:18
Alignment explanation
Indices: 40598--40674 Score: 115
Period size: 18 Copynumber: 4.4 Consensus size: 18
40588 TGGGCCATAG
40598 CCACCACCACCATACCCA
1 CCACCACCACCATACCCA
*
40616 CTACCACCACCATACCCA
1 CCACCACCACCATACCCA
40634 CCACCACCACCATA--C-
1 CCACCACCACCATACCCA
*
40649 CCGCCACCACCATACCCA
1 CCACCACCACCATACCCA
40667 CCACCACC
1 CCACCACC
40675 GTTGCCCCCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.25
16 1 0.02
17 1 0.02
18 37 0.71
ACGTcount: A:0.31, C:0.61, G:0.01, T:0.06
Consensus pattern (18 bp):
CCACCACCACCATACCCA
Found at i:40635 original size:33 final size:30
Alignment explanation
Indices: 40592--40674 Score: 94
Period size: 33 Copynumber: 2.6 Consensus size: 30
40582 AAAACCTGGG
*
40592 CCATAGCCACCACCACCATACCCACTACCACCA
1 CCATACCCACCACCACCATA-CC-C-ACCACCA
*
40625 CCATACCCACCACCACCACCATACCCGCCACCA
1 CCATA--C-CCACCACCACCATACCCACCACCA
40658 CCATACCCACCACCACC
1 CCATACCCACCACCACC
40675 GTTGCCCCCA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
30 11 0.24
31 1 0.02
33 16 0.36
34 1 0.02
35 2 0.04
36 14 0.31
ACGTcount: A:0.31, C:0.59, G:0.02, T:0.07
Consensus pattern (30 bp):
CCATACCCACCACCACCATACCCACCACCA
Found at i:42038 original size:4 final size:4
Alignment explanation
Indices: 42031--42059 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
42021 AGAATATATA
42031 TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
42060 CAGGTATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:43706 original size:3 final size:3
Alignment explanation
Indices: 43700--43728 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
43690 CACCACTTCT
43700 ACC ACC ACC ACC ACC ACC ACC ACC ACC AC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC AC
43729 TATATGGTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:43989 original size:24 final size:24
Alignment explanation
Indices: 43962--44007 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
43952 ATTCGCTCCA
43962 TTGCTAGCAGAAGAACCATCACCT
1 TTGCTAGCAGAAGAACCATCACCT
43986 TTGCTAGCAGAAGAACCATCAC
1 TTGCTAGCAGAAGAACCATCAC
44008 TTGCATTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (24 bp):
TTGCTAGCAGAAGAACCATCACCT
Found at i:44047 original size:51 final size:51
Alignment explanation
Indices: 43986--44083 Score: 169
Period size: 51 Copynumber: 1.9 Consensus size: 51
43976 ACCATCACCT
* *
43986 TTGCTAGCAGAAGAACCATCACTTGCATTCTCGGCGGCAGAATTCGCTCCA
1 TTGCTAGCAGAAGAACCATCACCTACATTCTCGGCGGCAGAATTCGCTCCA
*
44037 TTGCTAGCAGAAGAACCATCACCTACATTCTCGGCTGCAGAATTCGC
1 TTGCTAGCAGAAGAACCATCACCTACATTCTCGGCGGCAGAATTCGC
44084 AGCCAAATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (51 bp):
TTGCTAGCAGAAGAACCATCACCTACATTCTCGGCGGCAGAATTCGCTCCA
Found at i:44051 original size:24 final size:24
Alignment explanation
Indices: 43949--44051 Score: 57
Period size: 24 Copynumber: 4.2 Consensus size: 24
43939 CTACATTCGC
43949 AGAATTCGCTCCATTGCTAGCAGA
1 AGAATTCGCTCCATTGCTAGCAGA
* * * *
43973 AGAA-CCATCACCTTTGCTAGCAGA
1 AGAATTC-GCTCCATTGCTAGCAGA
* * * * * *
43997 AGAACCATCACTTGCATT-CTCGGCGGC
1 AGAA--TTCGC-TCCATTGCT-AGCAGA
44024 AGAATTCGCTCCATTGCTAGCAGA
1 AGAATTCGCTCCATTGCTAGCAGA
44048 AGAA
1 AGAA
44052 CCATCACCTA
Statistics
Matches: 54, Mismatches: 18, Indels: 14
0.63 0.21 0.16
Matches are distributed among these distances:
23 1 0.02
24 34 0.63
25 5 0.09
26 3 0.06
27 11 0.20
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (24 bp):
AGAATTCGCTCCATTGCTAGCAGA
Found at i:62909 original size:1 final size:1
Alignment explanation
Indices: 62905--62933 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
62895 TCGTTTTTCC
62905 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
62934 CTGAATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:66628 original size:333 final size:335
Alignment explanation
Indices: 66042--66669 Score: 870
Period size: 333 Copynumber: 1.9 Consensus size: 335
66032 TTTATCAACT
** * * **
66042 TTTTGCCACAATACTCATAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCGGGC
1 TTTTGCCACAATACTCATAAAAAATATATAATTCAACACCAAAAAAATTGAAGGGCTTTTCACGC
* * * *
66107 TTCTAATATCGGTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAAATTCAGAA
66 TTCTAATATCAGTTTTCCATTTTTTTCAAAATTAATTTCTAATAAAATCAAAACAAAATTCAGAA
* * *
66172 ACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTT
131 ACTCGTAAAAACAAATCCTTAAAGCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTC
* * * * * *
66237 AAGGAGTCTTTACGCCAAAAATCATGTAAAATTGAGCCGTAACTCCGGAACACATTTTTAGCCAA
196 AAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGGAACCCCGAAACACATTTTTAGCCAA
* *
66302 AAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAAAACTGACCCGAAAAGTTT
261 AAACAGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAAAAACTGACCCGAAAAGTTT
66367 TCCCTAAATG
326 TCCCTAAATG
* *
66377 TTTTGCCACAATACTCA-GAAAAATATATAATTCAACACCAAAAAAATTGAAGGGTTTTTCACGC
1 TTTTGCCACAATACTCATAAAAAATATATAATTCAACACCAAAAAAATTGAAGGGCTTTTCACGC
* * * * *
66441 TTCTAATATTATTTTTCCA-TTTTTTCTAAAATT-A-TTCTTAATAAAATTAAAACAAGATTTAG
66 TTCTAATATCAGTTTTCCATTTTTTTC-AAAATTAATTTC-TAATAAAATCAAAACAAAATTCAG
** *
66503 ATGCTCGTAAAAACAAATCCTTAAAGCCAATGTGGCTGAGATTTGGTTATATGAATATAGATATT
129 AAACTCGTAAAAACAAATCCTTAAAGCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
* * * * *
66568 TCAAGGAGTTTTTATGCCAAAAACCATGCAAAACTGAG-TGGAGGCCCCGAAACGCATTTTTAGC
194 TCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGGA-ACCCCGAAACACATTTTTAGC
66632 CAAAAACAGTGATGGTTAGTACACGATTTCAGCTAAAA
258 CAAAAACAGTGATGGTTAGTACACGATTTCAGCTAAAA
66670 ACTGACACGA
Statistics
Matches: 254, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
332 5 0.02
333 172 0.68
334 60 0.24
335 17 0.07
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (335 bp):
TTTTGCCACAATACTCATAAAAAATATATAATTCAACACCAAAAAAATTGAAGGGCTTTTCACGC
TTCTAATATCAGTTTTCCATTTTTTTCAAAATTAATTTCTAATAAAATCAAAACAAAATTCAGAA
ACTCGTAAAAACAAATCCTTAAAGCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTC
AAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGGAACCCCGAAACACATTTTTAGCCAA
AAACAGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAAAAACTGACCCGAAAAGTTT
TCCCTAAATG
Found at i:66684 original size:983 final size:975
Alignment explanation
Indices: 64738--66686 Score: 2322
Period size: 983 Copynumber: 2.0 Consensus size: 975
64728 GAACGCGTTC
* * * * ** **
64738 TTTGCCACAATCCTCATAATAAATATATAATTCAACACCAAAAAAATTGTCGGGTTTTTCACGCT
1 TTTGCCACAATACTCAGAATAAATATATAACTCAAAACCAAAAAAATTGAAGAATTTTTCACGCT
* * *
64803 TCTAATAATGTTTTTTTTTTCCGAATTTATTTCTAATTAAATCGAAATAAGATTCAAATTCTCGT
66 TCTAATAATGTTTTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAAATGCTCAT
* * ** *
64868 AAAAACAAATCCTTAAATCCATTTTTTCTAAGATTTGGTTAGATGAATATAGATATTTTAAGGAG
131 AAAAACAAATCCTTAAATCCAATGTAGCTAAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
* * * *
64933 TCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCAAAAACGCGTTTTTAGGCAAAAACCG
196 TCTCTCTGCCAAAAATCATGCAAAACTGACTCGAGACCCAAAAACGCGTTTTTAGGCAAAAA-C-
* * * * * * *
64998 TGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCGGAAAAGTTTTTTTTTCTCAATTTTTTT
259 T-ATCGTAAGTACACGATTTCGGCTAAAAAACTAACCCGAAAA---TATTTTTATCAA-TCTTTT
*
65063 TGCAAAATATCCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGTCGTTTCACGCTTCA
319 TGCAAAATATCCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCGTTTCACGCTTCA
* * * * * **
65128 AATATCGTTTTTCCATTTTTTTCCGAATTGATTTCTAATTAAATCAAAACAAGATTGAGATGCTC
384 AATATCGGTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCAAAACAAAATTCAGAAACTC
* * * *
65193 ATAAAAACAAATTCTTATATCCAATGTGGTTGACAATTGGTTCGATGAATATTGATATTTCAAGG
449 ATAAAAACAAATCCTTAAATCCAATGTGGCTGACAATTGGTTCGATGAATATAGATATTTCAAGG
* ** * * * *
65258 ATTCTTTGTGCCAAAAATCATGCAAAATTGAGCCGGCACTCCGGAACGCGTTTTTAGTCAAAAAC
514 AGTCTTTACGCCAAAAATCATGCAAAATTGAGCCGGAACTCCGGAACACATTTTTAGCCAAAAAC
* * * *
65323 CGTGGCATACACGATTTCGCCTAAAATTTTGCAAAAATTGACCCGAAAATTTTTTCCTCAATATT
579 CGTGGCATACACGATTTCGCCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTCCCTAAATATT
* *
65388 TTTCCACGATACTCGAAAAAAATTATATAATTCAACACCAAAAAATTGAAGGGTTTTTCACACTT
644 TTGCCACAATACTCGAAAAAAATTATATAATTCAACACCAAAAAATTGAAGGGTTTTTCACACTT
* * * * * *
65453 TTAATATCGTTTTTTTCATTTTTTCCCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGAT
709 CTAATATC-TTTTTTCCATTTTTT-CCCAAAATTATTTCTAATAAAATCAAAACAAGATTCAGAT
** *
65518 GCTCGTAAAAACAAATTTTTAAATCTCATGTGGCTGAGATTTAATTAGATAAATATAGATATTTA
772 GCTCGTAAAAACAAATCCTTAAAGCTCATGTGGCTGAGATTTAATTAGATAAATATAGATATTTA
* * * * * *
65583 AAGGATTCTTTCTTCCTAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACTCGTTTTTAGCAAA
837 AAGGATTCTTTATGCCAAAAACCATGCAAAACTGAGTCGGGGCCCCGAAACGCATTTTTAGC---
* * * ****
65648 AAAAAAAAAATCTGTGATGGTTAGTGCACGATTTCAATTAAATTTTTGAAAAACTGACCCGAATA
899 ---AAAAAAATCAGTGATGGTTAGTACACGATTTCAATAAAATACACGAAAAACTGACCCGAATA
65713 ATTTTTCCTCAATTT
961 ATTTTTCCTCAATTT
* *
65728 TTTGCCATAATACTCAGAA-AAATATATAACTCAAAACCAAAAAAATTGAAGAATTTTTCACGTT
1 TTTGCCACAATACTCAGAATAAATATATAACTCAAAACCAAAAAAATTGAAGAATTTTTCACGCT
* *
65792 TCTAATATCAT-TTTCCCGTTATTTTT-CGAATTTATTTCTAATTAAATCGAAACAAGATTTATA
66 TCTAATA--ATGTTT----TT-TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAAA
* *
65855 TGCTCATAAAAACAAAT-CTGTGAATCCAATGTAGCTGAGATTTGGTTAGATGAATATAGATATT
124 TGCTCATAAAAACAAATCCT-TAAATCCAATGTAGCTAAGATTTGGTTAGATGAATATAGATATT
* ** * *
65919 TCAAGGATTCTCTCTGCCAAAAATCATGCAAAACTGAACT-GAGACCCCGAAATGCGTTTTTAGT
188 TCAAGGAGTCTCTCTGCCAAAAATCATGCAAAACTG-ACTCGAGACCCAAAAACGCGTTTTTAGG
65983 C-AAAA-T-TCGTAACGTACACGATTTCGGCT-AAAAACTAACCCGAAAA-ATTTTTATCAA-CT
252 CAAAAACTATCGTAA-GTACACGATTTCGGCTAAAAAACTAACCCGAAAATATTTTTATCAATCT
* * * **
66042 TTTTGCCACAATA-CTCATAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCGGG
316 TTTTG-CAAAATATC-CAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCGTTTCACG
* *
66106 CTTCTAATATCGGTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
379 CTTCAAATATCGGTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCAAAACAAAATTCAGA
* * *
66171 AACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTT
444 AACTCATAAAAACAAATCCTTAAATCCAATGTGGCTGACAATTGGTTCGATGAATATAGATATTT
* * *
66236 TAAGGAGTCTTTACGCCAAAAATCATGTAAAATTGAGCCGTAACTCCGGAACACATTTTTAGCCA
509 CAAGGAGTCTTTACGCCAAAAATCATGCAAAATTGAGCCGGAACTCCGGAACACATTTTTAGCCA
* *
66301 AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAAAACTGACCCGAAAAGTT
574 AAAACC--G-TGG-CA-TACACGATTTCGCCTAAAATTTTGC---AAAAACTGACCCGAAAAGTT
* *
66366 TTCCCTAAATGTTTTGCCACAATACTC-AGAAAAA-TATATAATTCAACACCAAAAAAATTGAAG
631 TTCCCTAAATATTTTGCCACAATACTCGAAAAAAATTATATAATTCAACACC-AAAAAATTGAAG
* * *
66429 GGTTTTTCACGCTTCTAATAT-TATTTTTCCATTTTTT-CTAAAATTA-TTCTTAATAAAATTAA
695 GGTTTTTCACACTTCTAATATCT-TTTTTCCATTTTTTCCCAAAATTATTTC-TAATAAAATCAA
* ** *
66491 AACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAAGC-CAATGTGGCTGAGATTTGGTTATAT
758 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAGCTC-ATGTGGCTGAGATTTAATTAGAT
* *
66555 GAATATAGATATTTCAAGGAGTT-TTTATGCCAAAAACCATGCAAAACTGAGT-GGAGGCCCCGA
822 AAATATAGATATTTAAAGGA-TTCTTTATGCCAAAAACCATGCAAAACTGAGTCGG-GGCCCCGA
* *
66618 AACGCATTTTTAGC-CAAAAA-CAGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACACGAA
885 AACGCATTTTTAGCAAAAAAATCAGTGATGGTTAGTACACGATTTCA-AT-AAAA-T-ACACGAA
66681 AAACTG
946 AAACTG
66687 GTTACAAATC
Statistics
Matches: 816, Mismatches: 113, Indels: 67
0.82 0.11 0.07
Matches are distributed among these distances:
979 23 0.03
980 6 0.01
981 3 0.00
982 8 0.01
983 234 0.29
984 9 0.01
985 1 0.00
986 9 0.01
987 134 0.16
988 46 0.06
989 90 0.11
990 57 0.07
991 42 0.05
993 6 0.01
994 141 0.17
995 7 0.01
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.33
Consensus pattern (975 bp):
TTTGCCACAATACTCAGAATAAATATATAACTCAAAACCAAAAAAATTGAAGAATTTTTCACGCT
TCTAATAATGTTTTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAAATGCTCAT
AAAAACAAATCCTTAAATCCAATGTAGCTAAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
TCTCTCTGCCAAAAATCATGCAAAACTGACTCGAGACCCAAAAACGCGTTTTTAGGCAAAAACTA
TCGTAAGTACACGATTTCGGCTAAAAAACTAACCCGAAAATATTTTTATCAATCTTTTTGCAAAA
TATCCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCGTTTCACGCTTCAAATATCG
GTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCAAAACAAAATTCAGAAACTCATAAAAA
CAAATCCTTAAATCCAATGTGGCTGACAATTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
ACGCCAAAAATCATGCAAAATTGAGCCGGAACTCCGGAACACATTTTTAGCCAAAAACCGTGGCA
TACACGATTTCGCCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTCCCTAAATATTTTGCCAC
AATACTCGAAAAAAATTATATAATTCAACACCAAAAAATTGAAGGGTTTTTCACACTTCTAATAT
CTTTTTTCCATTTTTTCCCAAAATTATTTCTAATAAAATCAAAACAAGATTCAGATGCTCGTAAA
AACAAATCCTTAAAGCTCATGTGGCTGAGATTTAATTAGATAAATATAGATATTTAAAGGATTCT
TTATGCCAAAAACCATGCAAAACTGAGTCGGGGCCCCGAAACGCATTTTTAGCAAAAAAATCAGT
GATGGTTAGTACACGATTTCAATAAAATACACGAAAAACTGACCCGAATAATTTTTCCTCAATTT
Found at i:68621 original size:26 final size:27
Alignment explanation
Indices: 68585--68638 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
68575 TTTTAATAAG
*
68585 TATTCTTTTTAG-TCATTTAACTTTTT
1 TATTCTTTTTAGATCATTCAACTTTTT
* *
68611 TATTTTTTTTAGATGATTCAACTTTTT
1 TATTCTTTTTAGATCATTCAACTTTTT
68638 T
1 T
68639 TTATTAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.20, C:0.09, G:0.06, T:0.65
Consensus pattern (27 bp):
TATTCTTTTTAGATCATTCAACTTTTT
Found at i:70165 original size:332 final size:329
Alignment explanation
Indices: 69145--70997 Score: 1867
Period size: 332 Copynumber: 5.6 Consensus size: 329
69135 ATACTTTAAA
* * * * *
69145 TCATCTAATCAAATCTCAGCAATATTTGATTTAAAAATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
** * *
69210 TTCGATTTAATTAGAAATTAATTTAGAAAAATAA-GAAATACGATATTAAAAGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATTAATTCGGAAAAA-AAGGAAAAACGATATTAGAAGCGTGAAAAGCCC
** * * * *
69274 ACCAAACTTTTTGGCGTTGAATTATATA-TTTTTATGATTATTTTAGCTAAAAATTGAGG-AAAA
130 TTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTA-TTTGGCAAAAAATTGAGGAAAAA
* * *
69337 ATCTTTCGTGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGCACTATAACTAACCATCACGGTT
194 AT-TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG-----T-ACTAACTATCACGATT
** * * * * ** *
69402 TTTCACTAAAAACGCGTTTCG-GGGACGCGCCTCAATTTTGCATGATTTTTGACTCCGAGACTAC
252 TTTGGCTAAAAACGCGTTTCGAGTG-C-CGACTCAATTTTGCATGATTTTTGGCACAAAGACTCC
69466 TTGAAATATCTATAT
315 TTGAAATATCTATAT
*
69481 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
* * * **
69546 TTCGATTTAATTAGAAATTTATT-TG-------GGAAAAATGATATTAGAAGCGTGAAAAATCCT
66 TTCGATTTAATTAGAAATTAATTCGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCCT
* * * * *
69603 TCAAATTTTTTTGGCGTT-AAGTTATGTATTTTGTCTGAGTATTTTGGCAAAAAATAGAGG-AAA
131 TC-AATCTTTTTGGCGTTGAA-TTATATATTTTTTATGAGTA-TTTGGCAAAAAATTGAGGAAAA
* * * * * * * **
69666 ATTTTTCGGGTTAGTTTTT-CGAAATTTTAACCGAAATCGTGCACTAACAATCACTTTTTTTTTT
193 AATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCAC---GATTTTT
* * * * * * *
69730 TGCTAAAAACGCGTTTCGAG-GCCCCCACTTAGTTTTGCATGATTTTAGGTAGAAAGACTCCTTG
255 GGCTAAAAACGCGTTTCGAGTG--CCGACTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTG
69794 AAATATCTATAT
318 AAATATCTATAT
** * * ** **
69806 TCATCTAATTAAATTTCAGCCACATTGGATTTAAGAATTTGTTTTTACAATTATCTGAATCAAGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
* *
69871 TTCGATTTAATTAGAAATAAATTCGGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCC
66 TTCGATTTAATTAGAAATTAATTC-GGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCC
*
69936 TTCAATGTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTCTGGCAAAAAATTGAGGAAAAA
130 TTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATT-TGGCAAAAAATTGAGGAAAAA
* *
70001 ATTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCTATCACGATTTTTGGCT
194 ATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGATTTTTGGCT
* * * *
70066 AAAAACGCATTCCAGAGTGCCGGCTCAATTTTGCAAGATTTTTGGCACAAAGACTCCTT-AAAGT
259 AAAAACGCGTTTC-GAGTGCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAA-T
70130 ATCTATAT
322 ATCTATAT
* * * * * *
70138 TCAT-TGAACCAAATGTCAGCCACATTGGATATAAAAATTTGTATTTATGAGCATCTCAATCTTG
1 TCATCT-AACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTG
**
70202 TTTTAATTTAATTAGAAATTAATTC-GAAAACAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
65 TTTCGATTTAATTAGAAATTAATTCGGAAAA-AAA-GGAAAAACGATATTAGAAGCGTGAAAAGC
* * * * * * *
70266 TCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTAAATATTTCGCAAAAAAATTGA-GAAA
128 CCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTGGC-AAAAAATTGAGGAAA
* *
70330 AAACTTTTCGGGTC-A-----G----TTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTG
192 AAA-TTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGATTTTTG
* * * * *
70385 GCTAAAAACGAGTTTC-A-TGGCCCCGACACAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTG
256 GCTAAAAACGCGTTTCGAGT-G--CCGACTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTG
70448 AAATATCTATAT
318 AAATATCTATAT
* *
70460 TCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTG
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATC-TTG
* * * *
70525 TTTCGATTTAATTAGAAATAAATTCGG-AAAAAAGAAGAAAACGATATT-GAAAGCATGAAAACC
65 TTTCGATTTAATTAGAAATTAATTCGGAAAAAAAGGA-AAAACGATATTAG-AAGCGTGAAAAGC
* *
70588 CCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAAATTTGAGGA
128 CCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATT-TGGC-AAAAAA-TTGAGGA
* * * * *
70652 AAAACTTTTCAGGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTACTAACTATCTCGGTTTTT
190 AAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGATTTTT
* * * * * **
70717 GACAAAAAAACACGTTCCGAAGT-CTCGGCTCAATTTTGCATGATTTTTGGCGTAAAGAC-CCAT
255 GGC-TAAAAACGCGTTTCG-AGTGC-CGACTCAATTTTGCATGATTTTTGGCACAAAGACTCC-T
70780 TGAAATATCTATAT
316 TGAAATATCTATAT
* * * * * * ** * *
70794 TCATCGAATCAAATCTCAGCCACATTGTATATAAGAATTTGTTTTAATGAGCATCCAAATTTTTT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAA-TCTTG
* *
70859 TTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAAAAGATATTAGAAGCGTGAAAAGCC
65 TTTCGATTTAATTAGAAATTAATTCGGAAAAAAAGG-AAAAACGATATTAGAAGCGTGAAAAGCC
* * * *
70924 CGTCAATCTTTTTGGAGTTGAATTATATA-TTTTTACTGAATATTTTGCAAAAAATTGA-GAAAA
129 CTTCAATCTTTTTGGCGTTGAATTATATATTTTTTA-TGAGTATTTGGCAAAAAATTGAGGAAAA
*
70987 ACTTTTCGGGT
193 AATTTTCGGGT
70998 TAGTTTTTAA
Statistics
Matches: 1261, Mismatches: 192, Indels: 132
0.80 0.12 0.08
Matches are distributed among these distances:
319 1 0.00
320 2 0.00
321 36 0.03
322 194 0.15
323 45 0.04
324 8 0.01
325 139 0.11
326 3 0.00
327 1 0.00
328 48 0.04
329 32 0.03
330 35 0.03
331 18 0.01
332 233 0.18
333 92 0.07
334 189 0.15
335 73 0.06
336 111 0.09
337 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (329 bp):
TCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATTAATTCGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCCT
TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTGGCAAAAAATTGAGGAAAAAAT
TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGATTTTTGGCTAA
AAACGCGTTTCGAGTGCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCT
ATAT
Found at i:71148 original size:638 final size:633
Alignment explanation
Indices: 69145--71907 Score: 2694
Period size: 638 Copynumber: 4.2 Consensus size: 633
69135 ATACTTTAAA
* * * *
69145 TCATCTAATCAAATCTCAGCAATATTTGATTTAAAAATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAA-CAAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTGAATCTTGT
* ** * * * * *
69210 TTCGATTTAATTAGAAATTAATTTAGAAAAATAAGAAATACGATATTAAAAGCGTGAAAAGCCCA
65 TTCGATTTAATTAGAAATAAATTCGGAAAAAAAAGAAAAACGATATTAGAAGCGTGAAAAACCCT
* * * * * *
69275 CCAAACTTTTTGGCGTTGAATTATATA-TTTTTATGATTATTTTAGCTAAAAATTGAGGAAAAA-
130 TC-AATTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGGAAAAAC
*
69338 TCTTTCGTGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGCACTATAACTAACCATCACGGTTT
194 T-TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG-----T-ACTAACCATCACGGTTT
* * ** * * * ** *
69403 TTCACTAAAAACGCGTTTCGGGGACGCGCCTCAATTTTGCATGATTTTTGAC-TCCGAGA-CTAC
252 TTGACTAAAAACGCGTTCCGAAGTC-CGGCTCAATTTTGCATGATTTTTGGCGT-AAAGACCCA-
* * *
69466 TTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGA
314 TTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATATAAGAATTTGTTTTTACGA
* * * * *
69531 GCATCTGAATCTTGTTTCGATTTAATTAGAAATTTATT--------TGGGAAAAATGATATTAGA
379 GCATCCGAATCTTGTTTTGATTTAATTAGAAATTAATTCGGAAAAATGGAAAAAACGATATTAGA
** * * * * * *
69588 AGCGTGAAAAATCCTTCAAATTTTTTTGGCGTT-AAGTTATGTATTTTGTCTGAGTATTTTGGCA
444 AGCGTGAAAAGCCCGTC-AATCTTTTTGGAGTTGAA-TTATATATTTTTTCTGAATATTTT-GCA
* * * *
69652 AAAAATAGAGGAAAATTTTTCGGGTTAGTTTTTCGAAATTTTAACCGAAATCGTGCACTAACAAT
506 AAAAATTGAGAAAAACTTTTCGGGTCAG----T-----TTTTAACCGAAATCGTG--CTAAC-AT
* * * * * *
69717 CACTTTTTTTTTTTGCTAAAAACGCGTTTCGAGGCCCCCACTTAGTTTTGCATGATTTTAGGTAG
559 CA-----------TG-AAAAAACGCGTTTC--GGCCCCGACTCAGTTTTGAATGATTTTTGGCAG
69782 AAAGACTCCTTGAAATATCTATAT
610 AAAGACTCCTTGAAATATCTATAT
* * * * * ** **
69806 TCATCTAATTAAATTTCAGCCACATTGGATTTAAGAATTTGTTTTTACAATTATCTGAATCAAGT
1 TCATCTAA-CAAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTGAATCTTGT
*
69871 TTCGATTTAATTAGAAATAAATTCGGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCC
65 TTCGATTTAATTAGAAATAAATTC-GGAAAAAAAAGAAAAACGATATTAGAAGCGTGAAAAACCC
*
69936 TTCAATGTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTCTGGCAAAAAATTGAGGAAAAA
129 TTCAAT-TTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGGAAAAA
* * * * * *
70001 ATTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCTATCACGATTTTTGGCT
193 CTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGACT
* * **
70066 AAAAACGCATTCC-AGAGTGCCGGCTCAATTTTGCAAGATTTTTGGCACAAAGACTCC-TT-AAA
258 AAAAACGCGTTCCGA-AGT-CCGGCTCAATTTTGCATGATTTTTGGCGTAAAGAC-CCATTGAAA
* * * * *
70128 GTATCTATATTCATTGAACCAAATGTCAGCCACATTGGATATAAAAATTTGTATTTATGAGCATC
320 -TATCTATATTCATCGAACCAAATCTCAGCCACATTGGATATAAGAATTTGTTTTTACGAGCATC
* *
70193 TC-AATCTTGTTTTAATTTAATTAGAAATTAATTCGAAAACAAATGG-AAAAACGATATTAGAAG
384 -CGAATCTTGTTTTGATTTAATTAGAAATTAATTCG-GAA-AAATGGAAAAAACGATATTAGAAG
* * *
70256 CGTGAAAAGCTCGTCAATCTTTTTGGCA-TTGAATTATATATTTTTTCTAAATATTTCGCAAAAA
446 CGTGAAAAGCCCGTCAATCTTTTTGG-AGTTGAATTATATATTTTTTCTGAATATTTTGC-AAAA
*
70320 AATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTG
509 AATTGAG-AAAAACTTTTCGGGTCAGTTTTTAACCGAAATCGTG--CTAA-CAT--C-A----T-
* * *
70385 GCTAAAAACGAGTTTCATGGCCCCGACACAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAA
562 G-AAAAAACGCGTTTC--GGCCCCGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAA
70450 ATATCTATAT
624 ATATCTATAT
**
70460 TCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTG
1 TCATCTAA-CAAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTGAATC-TTG
* *
70525 TTTCGATTTAATTAGAAATAAATTCGGAAAAAAGAAG-AAAACGATATT-GAAAGCATGAAAACC
64 TTTCGATTTAATTAGAAATAAATTCGGAAAAAA-AAGAAAAACGATATTAG-AAGCGTGAAAAAC
* *
70588 CCTTCAATTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAAATTTGAGGAA
127 CCTTCAATTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGC-AAAAAA-TTGAGGAA
* * * *
70653 AAACTTTTCAGGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTACTAACTATCTCGGTTTTTG
190 AAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* *
70718 ACAAAAAAACACGTTCCGAAGTCTCGGCTCAATTTTGCATGATTTTTGGCGTAAAGACCCATTGA
255 AC-TAAAAACGCGTTCCGAAGTC-CGGCTCAATTTTGCATGATTTTTGGCGTAAAGACCCATTGA
* * * *
70783 AATATCTATATTCATCGAATCAAATCTCAGCCACATTGTATATAAGAATTTGTTTTAATGAGCAT
318 AATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATATAAGAATTTGTTTTTACGAGCAT
* * * *
70848 CCAAATTTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAAAAGATATTAGAAG
383 CCGAATCTTGTTTT-GATTTAATTAGAAATTAATTCGG-AAAAATGGAAAAAACGATATTAGAAG
*
70913 CGTGAAAAGCCCGTCAATCTTTTTGGAGTTGAATTATATATTTTTACTGAATATTTTGCAAAAAA
446 CGTGAAAAGCCCGTCAATCTTTTTGGAGTTGAATTATATATTTTTTCTGAATATTTTGCAAAAAA
* * *
70978 TTGAGAAAAACTTTTCGGGTTAGTTTTTAACCAAAATCATG-T-AC-TCA-GAAAAAACGCGTTT
511 TTGAGAAAAACTTTTCGGGTCAGTTTTTAACCGAAATCGTGCTAACATCATGAAAAAACGCGTTT
* * * *
71039 CGGATCCCGGCTCAGTTTTAAATGATTTTTGGCAGAAATACTCCTTGAAATATCTATAT
576 CGG-CCCCGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATAT
* *
71098 TCATCTAACAAAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTCAAGTTTTG
1 TCATCTAAC-AAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTGAA-TCTTG
* * *
71163 TTTCGATTTAATTAAAAATAAATTTGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCC
64 TTTCGATTTAATTAGAAATAAATTCGGAAAAAAAAGAAAAACGATATTAGAAGCGTGAAAAACCC
* * * *
71228 TTCATTTTTTTTGGCGTTAAATTATATATTTTTTCTGAGTATCGTGGCAAAAAATATTGAGGAAA
129 TTCA-ATTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGC-AAAAA-ATTGAGGAAA
* * *
71293 AACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACTGTTTTTGG
191 AACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGA
* * * * * *
71358 CTAAAAATGTGTTCCAAAGCGCCGTCTCAATTTTGCATGATTTTTGGCGTAAAGACTCATTGAAA
256 CTAAAAACGCGTTCCGAAG-TCCGGCTCAATTTTGCATGATTTTTGGCGTAAAGACCCATTGAAA
* * *
71423 TAT-TCAAATTCATCGAACCAAATGTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATC
320 TATCT-ATATTCATCGAACCAAATCTCAGCCACATTGGATATAAGAATTTGTTTTTACGAGCATC
* * * *
71487 TGAATCTTGTTTTGATTTAATTATAAATTAATTCGGGAAAAT-GAAAAAACGATATTAGAAGCAT
384 CGAATCTTGTTTTGATTTAATTAGAAATTAATTCGGAAAAATGGAAAAAACGATATTAGAAGCGT
* * * * *
71551 GAAAAAGGCCGTCAATATTTTT-GACGTTGAATTATATATTTTTTTCTGAGTATTGTGGTAAAAA
449 G-AAAAGCCCGTCAATCTTTTTGGA-GTTGAATTATATA-TTTTTTCTGAATATT-TTGCAAAAA
* * * * *
71615 ATTGGGAATAAACGTTTCGGGTCAGTTTTGAGCCGAAATTGTGTACTAACCATCACAGTTTTTGA
510 ATTGAGAA-AAACTTTTCGGGTCAGTTTTTAACCGAAATCGTG--CTAA-CAT--CA-----TGA
* * * * * * * ** *
71680 CTAAAAACGCGTTCCGGAGTCACGGCTCTGTTTTGCATGA-CTTTGGCACCAAGACTCCTTGAGA
564 --AAAAACGCGTTTC-G-GCCCCGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAA
* * *
71744 TAACTTTAC
625 TATCTATAT
*** * ** * * *
71753 TCATCTAATCAAATCTTTTCCACATTGGATTTAAGGATTTGCTTTTACGTGCATCTGAATTTTGT
1 TCATCTAA-CAAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * *
71818 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTG--AATCCC
65 TTCGATTTAATTAGAAATAAATTCGGAAAAAA-AAGAAAAACGATATTAGAAGCGTGAAAAACCC
*
71881 --CAATCTTTTTGGTGTTGAATTATATAT
129 TTCAAT-TTTTTGGCGTTGAATTATATAT
71908 ATATATATAT
Statistics
Matches: 1792, Mismatches: 230, Indels: 170
0.82 0.10 0.08
Matches are distributed among these distances:
635 23 0.01
636 36 0.02
637 41 0.02
638 298 0.17
639 155 0.09
640 2 0.00
642 1 0.00
643 1 0.00
644 1 0.00
645 1 0.00
646 1 0.00
647 3 0.00
649 1 0.00
650 2 0.00
651 23 0.01
652 1 0.00
653 51 0.03
654 197 0.11
655 238 0.13
656 153 0.09
657 262 0.15
658 3 0.00
659 2 0.00
660 1 0.00
661 78 0.04
662 57 0.03
663 69 0.04
664 3 0.00
665 41 0.02
666 44 0.02
667 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (633 bp):
TCATCTAACAAATCTCAGCCACAATGGATTTAAAAATTTGTTTTTACGAGCATCTGAATCTTGTT
TCGATTTAATTAGAAATAAATTCGGAAAAAAAAGAAAAACGATATTAGAAGCGTGAAAAACCCTT
CAATTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGGAAAAACTT
TTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGACTAAA
AACGCGTTCCGAAGTCCGGCTCAATTTTGCATGATTTTTGGCGTAAAGACCCATTGAAATATCTA
TATTCATCGAACCAAATCTCAGCCACATTGGATATAAGAATTTGTTTTTACGAGCATCCGAATCT
TGTTTTGATTTAATTAGAAATTAATTCGGAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAGC
CCGTCAATCTTTTTGGAGTTGAATTATATATTTTTTCTGAATATTTTGCAAAAAATTGAGAAAAA
CTTTTCGGGTCAGTTTTTAACCGAAATCGTGCTAACATCATGAAAAAACGCGTTTCGGCCCCGAC
TCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATAT
Found at i:77402 original size:42 final size:42
Alignment explanation
Indices: 77331--77423 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
77321 ATTCCTCATC
* *
77331 AAATCAACTTTTAATTCATTCTATATTTACTTTTACCTTAATT
1 AAAT-AACATTTAATTCATTCTATATTTACTTTCACCTTAATT
*
77374 AAATAACATTTAATTCATTCTATGTTTACTTTCACCTTAATT
1 AAATAACATTTAATTCATTCTATATTTACTTTCACCTTAATT
*
77416 AAACAACA
1 AAATAACA
77424 AAAATACAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 42 0.91
43 4 0.09
ACGTcount: A:0.37, C:0.17, G:0.01, T:0.45
Consensus pattern (42 bp):
AAATAACATTTAATTCATTCTATATTTACTTTCACCTTAATT
Found at i:78075 original size:21 final size:20
Alignment explanation
Indices: 78046--78084 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
78036 AAATATTATT
* *
78046 AATTTAATTAGATTATATTAG
1 AATTAAATTAAATT-TATTAG
78067 AATTAAATTAAATTTATT
1 AATTAAATTAAATTTATT
78085 CACAACCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
AATTAAATTAAATTTATTAG
Found at i:82014 original size:15 final size:15
Alignment explanation
Indices: 81994--82023 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81984 ATCAGGCTGC
*
81994 CACGATACACGATAT
1 CACGATACACAATAT
82009 CACGATACACAATAT
1 CACGATACACAATAT
82024 TTCAACCGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (15 bp):
CACGATACACAATAT
Found at i:82217 original size:16 final size:16
Alignment explanation
Indices: 82168--82217 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
82158 CAAATTTCAC
*
82168 TTTAAAAAGAATAATT
1 TTTATAAAGAATAATT
*
82184 TTTTTAAAGAATAATT
1 TTTATAAAGAATAATT
*
82200 TATAT-AA-AATAATT
1 TTTATAAAGAATAATT
82214 TTTA
1 TTTA
82218 ATCTGAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 10 0.34
15 2 0.07
16 17 0.59
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (16 bp):
TTTATAAAGAATAATT
Found at i:83804 original size:15 final size:15
Alignment explanation
Indices: 83779--83819 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
83769 AATAATTATT
83779 TTTAGATTATAATATA
1 TTTA-ATTATAATATA
*
83795 TTTAATTATAATATT
1 TTTAATTATAATATA
*
83810 TTTATTTATA
1 TTTAATTATA
83820 GTCATGGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTTAATTATAATATA
Found at i:84885 original size:331 final size:332
Alignment explanation
Indices: 84177--84985 Score: 993
Period size: 331 Copynumber: 2.4 Consensus size: 332
84167 TACTTTACAT
* * * *
84177 CATCTAA-CAAAATCTTAGCAACATTCGATTTAAGAATTTGTTTTTTACGAGCATTTGAATCTTG
1 CATCTAATC-AAATCTCAGCCACATTGGATTTAAGAATTTG-TTTTTACGAGCATCTGAATCTTG
* *
84241 TTTCGATTTAATTAGAAATTAATTTAGAAAAAATAAGAAATACGATAATAAAAGCGTAAAAGCCC
64 TTTCGATTTAATTAGAAATTAATTTAGAAAAAATAGGAAA-ACGATATTAAAAGCGTAAAAGCCC
* **
84306 TCCAATATTTTTGGCGTTGAATTATATAGTTTTATGAGTATTTTAGCCAAAAATTGAGGAGAAAT
128 TCCAATATTTTTGGCATTGAATTATATAGTTTTATGAGTATTTTAGCCAAAAAACGAGGAGAAAT
* * * *
84371 CTTTCATGTCAATTTTTGCAAAATTTTAGCCGAAATCGGGTACTAACAAACCATCACGGTTTTTT
193 CTTTCAGGTCAATTTTTACAAAATTTTAGCCGAAATCGGGTAATAACAAACCATCA--GATTTTT
** * * * * * * ***
84436 GTCTAAAAACGCGTTCTGGGGACTCGGCTCAATATTGCATGATTTTTGGCTCCGAAAGTTTTTGA
256 GGATAAAAAAGCGGTCTGGGGACCCGGCTCAATATTGCATGATTTTTGACGCCGAAACTCCGTGA
*
84501 AATATCTATATT
321 AATATCTATATC
* * *
84513 CATCTAATCAAATCTCACCCACATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATCTTGTT
1 CATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTT
* * *
84578 TCGATTTAATTTGAAATTAATTTGGAAAAAATAGGAAAACGATATTAGAAA-TGTCAAAAGCCCT
66 TCGATTTAATTAGAAATTAATTTAGAAAAAATAGGAAAACGATATTA-AAAGCGT-AAAAGCCCT
* * * *
84642 TCAATTTTTTTGGCATTGATTTATATATTTTTTATGAGTATTTTAGCCAAAAAACGAGGA-AATA
129 CCAATATTTTTGGCATTGAATTATATA-GTTTTATGAGTATTTTAGCCAAAAAACGAGGAGAA-A
* * * *
84706 TTTTTCGGGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAAC-CACCA-CA-ATTTTTG
192 TCTTTCAGGTCAATTTTTACAAAATTTTAGCCGAAATCGGGTAATAACAAACCATCAGATTTTTG
* * * * *
84768 GATAAAAAAGCGGTCTGGGGGCCCTGCTCAGTTTTGTATGATTTTTGACGCC-AAGACTCCGTGA
257 GATAAAAAAGCGGTCTGGGGACCCGGCTCAATATTGCATGATTTTTGACGCCGAA-ACTCCGTGA
*
84832 GATATCTATATC
321 AATATCTATATC
* *
84844 CATCTAATCAAATCTCAGCCACATTGGATTTAAAAATTTGTTTTTACAAGCATCTGAATCTTGTT
1 CATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTT
* * * *
84909 TCGATTTAATTAGAAATTAATTTAGAAAATATATGAAAAACGATATTAAAAGCGTGAAAAGTCCA
66 TCGATTTAATTAGAAATTAATTTAGAAAAAATA-GGAAAACGATATTAAAAGCGT-AAAAGCCCT
*
84974 CCAATCTTTTTG
129 CCAATATTTTTG
84986 CCTGTAGATT
Statistics
Matches: 405, Mismatches: 60, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
330 2 0.00
331 154 0.38
332 32 0.08
334 12 0.03
335 99 0.24
336 105 0.26
337 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36
Consensus pattern (332 bp):
CATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTT
TCGATTTAATTAGAAATTAATTTAGAAAAAATAGGAAAACGATATTAAAAGCGTAAAAGCCCTCC
AATATTTTTGGCATTGAATTATATAGTTTTATGAGTATTTTAGCCAAAAAACGAGGAGAAATCTT
TCAGGTCAATTTTTACAAAATTTTAGCCGAAATCGGGTAATAACAAACCATCAGATTTTTGGATA
AAAAAGCGGTCTGGGGACCCGGCTCAATATTGCATGATTTTTGACGCCGAAACTCCGTGAAATAT
CTATATC
Done.