Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022481.1 Corchorus olitorius cultivar O-4 contig22514, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68249

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17777--17806
4
7.8
4
92
7
53
0
20
0
80
0.72
22134--22164
2
15.5
2
100
0
62
51
0
0
48
1.00
22944--22980
10
3.8
10
92
3
58
0
16
2
81
0.81
24676--24710
18
1.9
18
88
0
52
40
17
37
5
1.73
26441--26481
19
2.2
19
100
0
82
60
12
9
17
1.57
27054--27079
5
5.2
5
100
0
52
57
0
0
42
0.98
37488--37741
122
2.0
127
86
9
360
37
10
1
50
1.47
37728--37765
14
2.8
14
88
4
60
36
2
2
57
1.26
38684--38760
30
2.6
30
80
14
86
32
24
11
31
1.91
39009--39128
31
3.9
31
72
14
88
34
11
24
30
1.91
39053--39129
29
2.6
30
83
6
102
31
10
25
32
1.90
47195--47235
21
2.0
21
100
0
82
31
14
14
39
1.87
48130--48185
28
2.0
28
100
0
112
25
14
25
35
1.93
65321--65391
31
2.2
33
80
9
85
35
23
5
35
1.79

Tables:   1

The End!