Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022482.1 Corchorus olitorius cultivar O-4 contig22515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4724
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33


Found at i:3422 original size:6 final size:6

Alignment explanation


    Indices: 3411--3464  Score: 81
    Period size: 6  Copynumber: 8.7  Consensus size: 6

       3401 TGTATAGTGA

                                                    *                
       3411 ATATCT ATATCT ATATACT ATATCT ATATCT ATATTT ATATCT ATATACT
          1 ATATCT ATATCT ATAT-CT ATATCT ATATCT ATATCT ATATCT ATAT-CT

                
       3461 ATAT
          1 ATAT

       3465 AAGTCTAAAC


Statistics
Matches: 44,  Mismatches: 2, Indels: 3
        0.90            0.04        0.06

Matches are distributed among these distances:
   6   32  0.73
   7   12  0.27

ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50


Consensus pattern (6 bp):   
ATATCT

Found at i:3433 original size:19 final size:19

Alignment explanation


    Indices: 3411--3465  Score: 85
    Period size: 19  Copynumber: 2.9  Consensus size: 19

       3401 TGTATAGTGA

                               
       3411 ATATCTATATCTATATACT
          1 ATATCTATATCTATATACT

                             * 
       3430 ATATCTATATCTATAT-TT
          1 ATATCTATATCTATATACT

                              
       3448 ATATCTATATACTATATA
          1 ATATCTATAT-CTATATA

       3466 AGTCTAAACT


Statistics
Matches: 33,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  18   11  0.33
  19   22  0.67

ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49


Consensus pattern (19 bp):   
ATATCTATATCTATATACT
Done.