Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022483.1 Corchorus olitorius cultivar O-4 contig22516, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2010
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37


Found at i:636 original size:14 final size:14

Alignment explanation


    Indices: 613--643  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        603 ATTCAATTTC

                 *        
        613 TTTTGTTATGTTAT
          1 TTTTGGTATGTTAT

                          
        627 TTTTGGTATGTTAT
          1 TTTTGGTATGTTAT

               
        641 TTT
          1 TTT

        644 AGATCACATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71


Consensus pattern (14 bp):   
TTTTGGTATGTTAT
Done.