Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022485.1 Corchorus olitorius cultivar O-4 contig22518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37


Found at i:416 original size:58 final size:58

Alignment explanation


    Indices: 315--427  Score: 158
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        305 AGCATCATGC

                  * *                                                 
        315 CTCGGTTCTAAAACGTCTTTTTTAGACATCTAATAAAAAAACATGTCACTCGATAAGT
          1 CTCGGTCCGAAAACGTCTTTTTTAGACATCTAATAAAAAAACATGTCACTCGATAAGT

                                                    *           *    
        373 CTCGGTCCGAAAACGTCTTTTTTTATG-CATCTAAT-AAAGAACATGTCACTTGATA
          1 CTCGGTCCGAAAACGTC-TTTTTTA-GACATCTAATAAAAAAACATGTCACTCGATA

        428 TTTGATTAAT


Statistics
Matches: 49,  Mismatches: 4, Indels: 4
        0.86            0.07        0.07

Matches are distributed among these distances:
  58   33  0.67
  59   15  0.31
  60    1  0.02

ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34


Consensus pattern (58 bp):   
CTCGGTCCGAAAACGTCTTTTTTAGACATCTAATAAAAAAACATGTCACTCGATAAGT
Done.