Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022487.1 Corchorus olitorius cultivar O-4 contig22520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  215754

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--2391
330
5.0
330
80
6
1626
32
15
15
37
1.89
2896--4951
332
6.2
329
80
6
2104
33
14
15
36
1.88
2896--5559
661
4.0
649
79
8
2436
33
14
15
36
1.88
7246--7349
48
2.1
49
91
1
165
40
8
11
39
1.72
14099--14159
29
2.1
29
84
0
77
52
13
3
31
1.56
14128--14482
152
2.3
153
87
7
482
39
14
11
34
1.83
25018--25102
45
1.9
43
95
0
134
40
20
5
34
1.76
27872--27897
2
13.0
2
100
0
52
50
0
0
50
1.00
29135--29304
86
2.0
85
84
3
225
40
19
18
21
1.92
29952--30009
28
2.2
26
80
14
73
43
17
20
18
1.89
29959--30012
28
1.9
28
96
0
99
40
16
22
20
1.91
31790--31844
27
2.0
27
100
0
110
29
10
14
45
1.79
37374--37433
22
2.7
22
89
0
93
23
21
1
53
1.55
38796--38839
22
2.0
22
100
0
88
40
4
9
45
1.56
54906--55007
52
2.0
52
94
0
177
29
5
10
53
1.59
61477--61530
27
2.0
27
100
0
108
29
3
22
44
1.70
68676--68707
1
32.0
1
100
0
64
100
0
0
0
0.00
69753--69777
9
2.8
9
100
0
50
32
0
32
36
1.58
81140--81168
2
14.5
2
100
0
58
48
0
0
51
1.00
83742--83766
6
4.2
6
100
0
50
52
16
16
16
1.76
96459--96590
45
2.9
45
90
0
201
21
28
21
29
1.98
99709--99737
2
14.5
2
100
0
58
51
48
0
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100923--100985
32
2.0
32
93
0
108
44
15
15
23
1.86
102583--102625
3
14.3
3
100
0
86
67
0
0
32
0.91
106548--106761
107
2.0
109
83
4
272
29
10
20
39
1.86
111605--111642
19
2.0
19
100
0
76
10
21
21
47
1.80
121547--121583
18
2.1
18
94
0
65
18
29
5
45
1.72
127704--127746
20
2.1
20
82
4
50
44
4
2
48
1.36
127878--127939
22
2.9
21
76
11
63
53
19
12
14
1.73
127878--127928
11
4.7
11
82
2
59
56
19
11
11
1.65
129227--129261
16
2.2
16
90
10
54
31
14
8
45
1.75
129544--129621
37
2.1
38
92
2
131
21
6
20
51
1.70
131766--131800
17
2.1
17
100
0
70
31
11
22
34
1.90
135415--135462
23
2.0
23
84
12
60
60
2
2
35
1.20
136114--136144
2
15.5
2
93
0
53
48
0
0
51
1.00
136469--136531
31
2.0
32
87
3
92
25
9
22
42
1.83
137147--137404
124
2.0
128
88
6
389
37
10
2
48
1.52
137391--137428
13
2.8
14
84
4
51
34
5
2
57
1.35
139212--139262
2
25.0
2
84
4
66
45
5
1
47
1.38
139782--139808
13
2.1
13
100
0
54
29
7
0
62
1.22
140780--141646
330
2.6
323
82
4
977
36
14
15
33
1.88
143025--143058
2
16.5
2
93
6
59
47
0
2
50
1.16
144020--144055
5
7.4
5
96
3
65
0
16
0
83
0.65
161765--161810
22
2.1
22
91
0
74
36
10
19
32
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170826--170859
16
2.1
17
88
5
52
0
14
8
76
1.01
174735--174763
8
3.8
8
95
4
51
24
0
41
34
1.55
190620--190660
19
2.2
19
86
8
57
68
0
12
19
1.21
197359--197396
10
3.5
11
83
16
53
36
7
5
50
1.54
199565--199618
22
2.5
22
81
6
56
62
7
1
27
1.32
199608--199714
35
3.4
33
69
28
97
52
14
1
31
1.52
199600--199728
60
2.2
60
94
1
224
54
13
1
31
1.48

Tables:   1

The End!