Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022488.1 Corchorus olitorius cultivar O-4 contig22521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95461

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--51
2
17.5
2
100
0
70
51
0
0
48
1.00
16176--16259
42
2.0
42
97
0
159
55
9
17
16
1.67
26558--26596
16
2.4
17
87
12
55
43
2
0
53
1.14
28330--28388
28
2.1
28
93
0
100
16
33
0
49
1.47
28932--28980
25
2.0
25
100
0
98
38
12
12
36
1.80
29780--29938
78
2.0
78
95
0
282
34
13
0
50
1.47
30598--30632
18
1.9
18
88
11
54
37
2
0
60
1.12
33232--33322
29
3.1
29
66
12
85
28
20
21
28
1.99
33200--33429
60
3.7
60
88
7
345
25
20
22
32
1.98
33200--33429
126
1.8
126
93
1
399
25
20
22
32
1.98
34494--34530
19
1.9
19
100
0
74
43
10
8
37
1.69
37461--37536
29
2.5
30
93
6
136
47
27
13
11
1.77
40913--40938
3
8.7
3
100
0
52
65
0
0
34
0.93
44513--44541
13
2.1
14
93
6
51
37
20
20
20
1.94
47253--47315
23
2.7
23
80
0
72
33
7
30
28
1.86
47279--47327
23
2.1
23
88
7
73
28
8
32
30
1.86
48172--48218
18
2.4
20
75
13
53
2
14
55
27
1.51
51559--51589
14
2.1
15
94
5
55
12
3
0
83
0.75
51755--52351
22
27.3
22
67
16
194
34
15
9
40
1.80
52081--52160
23
3.5
23
86
6
110
38
17
6
37
1.75
52081--52332
85
2.9
84
75
12
199
35
15
7
40
1.77
52446--52497
22
2.4
22
83
3
70
34
13
7
44
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52964--53003
2
20.0
2
100
0
80
50
0
0
50
1.00
53763--54268
168
3.0
167
90
2
809
23
24
22
29
1.99
59063--59092
16
1.9
15
93
6
51
0
13
0
86
0.57
76798--76836
20
2.0
20
94
0
69
12
0
48
38
1.42
77836--77882
26
1.9
23
83
12
58
36
4
8
51
1.52
79048--79072
10
2.5
10
100
0
50
8
0
0
92
0.40
80948--81158
111
1.9
111
89
3
327
43
14
16
25
1.86
82776--82800
12
2.1
12
100
0
50
48
24
8
20
1.76
83001--83038
17
2.2
17
95
0
67
55
0
31
13
1.38
84071--84097
11
2.5
11
100
0
54
81
7
11
0
0.87
87843--88109
138
1.9
137
93
0
453
30
21
20
27
1.98
92254--92283
13
2.3
13
94
0
51
30
30
6
33
1.83
94640--94802
60
2.7
60
88
0
245
33
20
20
25
1.97
94700--94802
31
3.4
31
71
15
97
36
20
19
23
1.95
94843--95005
60
2.7
59
85
7
238
26
19
19
34
1.96
94847--95009
31
5.4
29
67
19
93
27
19
19
33
1.96

Tables:   1

The End!