Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022491.1 Corchorus olitorius cultivar O-4 contig22524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125445

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12681--12741
4
15.2
4
100
0
122
75
0
0
24
0.80
16066--16130
33
2.0
33
100
0
130
36
15
6
41
1.72
19001--19042
19
2.2
19
86
0
57
42
4
4
47
1.45
21129--21386
126
2.0
128
86
8
364
37
10
1
50
1.47
21308--21352
22
2.0
22
86
4
63
22
13
0
64
1.28
22667--22695
2
14.5
2
100
0
58
51
0
0
48
1.00
31282--31307
6
4.3
6
100
0
52
34
15
0
50
1.45
33591--33620
2
15.0
2
100
0
60
50
0
0
50
1.00
36430--36485
27
2.1
27
93
0
94
57
12
5
25
1.56
39961--40056
48
2.0
48
100
0
192
41
25
14
18
1.88
39960--40038
25
3.2
25
64
25
69
43
22
17
16
1.88
43080--43178
49
2.0
49
84
6
126
46
11
13
29
1.77
57232--57283
26
2.0
26
100
0
104
26
3
15
53
1.59
65009--65038
15
2.0
15
93
0
51
43
6
0
50
1.28
69031--69136
45
2.3
44
84
9
149
45
1
11
41
1.51
71274--71321
24
2.0
24
100
0
96
33
0
12
54
1.38
73630--73688
24
2.5
24
97
0
109
37
20
6
35
1.79
73730--73771
22
1.9
22
95
0
75
54
9
21
14
1.68
73761--73827
33
2.0
33
91
0
107
40
20
17
20
1.92
75841--75874
2
17.0
2
100
0
68
50
0
0
50
1.00
78044--78073
15
1.9
16
93
6
53
40
0
13
46
1.43
78334--78391
19
2.9
19
84
5
71
29
20
12
37
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80292--80320
2
14.5
2
100
0
58
48
0
0
51
1.00
87611--87682
22
3.4
22
66
14
60
23
36
27
12
1.91
87612--87691
42
1.9
41
94
2
142
20
36
27
16
1.93
98912--98941
2
15.0
2
100
0
60
50
0
0
50
1.00
103267--103456
95
2.0
95
97
0
362
35
14
17
33
1.90
105798--105830
7
4.7
7
96
0
57
27
30
0
42
1.56
106587--106639
22
2.2
23
77
16
54
0
56
1
41
1.10
118888--118945
19
2.9
19
87
5
80
29
22
12
36
1.90

Tables:   1

The End!