Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022492.1 Corchorus olitorius cultivar O-4 contig22525, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77366

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6797--6828
10
3.1
10
91
8
55
0
0
9
90
0.45
6800--6828
11
2.6
11
100
0
58
0
0
6
93
0.36
6835--6859
3
8.3
3
100
0
50
32
0
0
68
0.90
11106--11146
21
1.9
22
85
5
57
43
29
17
9
1.80
16464--16594
62
2.0
65
85
7
178
32
12
16
38
1.86
16567--16684
40
2.6
48
76
21
162
34
20
5
38
1.77
16606--16675
16
3.8
17
72
27
63
32
22
2
41
1.69
16597--16698
40
2.5
40
100
0
204
31
23
4
40
1.76
16623--16698
24
3.5
23
72
27
85
30
23
5
40
1.77
26241--26280
20
2.0
20
90
0
62
7
15
40
37
1.75
26328--26419
11
8.8
11
71
9
68
44
3
0
52
1.17
26332--26398
22
3.1
22
78
8
93
44
4
0
50
1.22
27135--27164
13
2.3
13
94
0
51
63
20
3
13
1.43
28493--28550
20
2.9
20
89
0
80
15
13
24
46
1.82
37018--37192
100
1.8
95
88
11
270
33
9
25
32
1.87
39117--39159
21
2.0
21
100
0
86
32
13
13
39
1.85
39556--39635
29
2.7
30
90
3
117
28
16
12
42
1.84
40325--40369
22
2.0
23
86
4
65
17
26
31
24
1.97
43324--43366
3
14.3
3
95
0
77
65
0
32
2
1.06
43591--43644
26
2.0
27
89
3
83
51
14
3
29
1.60
45900--45990
45
2.0
45
91
4
148
28
7
26
37
1.84
49039--49069
14
2.2
14
100
0
62
29
0
25
45
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52910--53005
47
2.0
47
97
0
183
36
10
17
35
1.84
73038--73143
15
7.1
15
69
0
68
27
23
33
15
1.94
73053--73123
30
2.4
30
100
0
142
28
19
35
16
1.94
73076--73168
45
2.1
45
100
0
186
31
19
34
15
1.92
73121--73261
30
4.7
30
95
0
255
29
20
33
16
1.94
73037--73198
75
2.2
75
96
0
297
29
21
33
16
1.95
74685--74725
2
20.5
2
100
0
82
51
0
0
48
1.00
74817--74915
49
2.0
49
100
0
198
32
12
14
41
1.82

Tables:   1

The End!