Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022493.1 Corchorus olitorius cultivar O-4 contig22526, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8340
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31


Found at i:1423 original size:9 final size:9

Alignment explanation


    Indices: 1409--1436  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       1399 CCTCAATTCA

                     
       1409 ATTCAAGAC
          1 ATTCAAGAC

                     
       1418 ATTCAAGAC
          1 ATTCAAGAC

                     
       1427 ATTCAAGAC
          1 ATTCAAGAC

             
       1436 A
          1 A

       1437 AAACGTTTCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.46, C:0.21, G:0.11, T:0.21


Consensus pattern (9 bp):   
ATTCAAGAC
Done.