genome.fa.s22495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022495.1 Corchorus olitorius cultivar O-4 contig22528, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69667

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8657--9982	329	4.0	330	80	7	1367	33	14	15	37	1.87
10990--11019	2	15.0	2	92	0	51	53	0	0	46	1.00
13176--13205	2	15.0	2	100	0	60	50	0	0	50	1.00
13506--13800	113	2.7	107	82	5	310	41	7	8	42	1.62
13605--13804	104	1.9	107	85	3	280	42	8	10	40	1.68
22253--22310	19	2.9	20	87	5	82	36	12	20	31	1.89
22253--22311	21	3.0	20	87	5	84	35	11	20	32	1.89
23170--23198	12	2.5	12	94	5	51	0	10	3	86	0.69
25626--27415	655	2.7	650	78	9	1884	37	15	13	32	1.87
28993--29094	51	2.0	50	83	9	127	23	23	11	41	1.87
32620--32649	15	1.9	16	93	6	53	53	3	0	43	1.17
32897--32939	2	21.0	2	90	4	68	48	2	2	46	1.27
38695--38741	25	1.9	24	91	4	76	55	6	6	31	1.51
38732--38812	39	2.0	40	92	2	137	37	3	8	50	1.51
39080--39123	5	9.6	5	76	18	51	56	0	20	22	1.42
39069--39123	18	3.4	17	73	23	55	54	0	21	23	1.45
39065--39123	31	1.9	31	92	0	100	54	0	22	23	1.45
40478--40518	18	2.2	19	86	4	57	17	2	21	58	1.50
45592--45647	28	2.0	28	100	0	112	28	28	14	28	1.95
51747--51771	12	2.1	12	100	0	50	16	0	24	60	1.36
56246--56288	23	1.9	22	85	4	59	20	6	2	69	1.23
58389--58649	131	2.0	132	91	0	425	25	19	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63421--64629	336	3.6	331	75	11	1064	37	16	13	33	1.87
63327--64766	336	4.3	334	74	12	719	38	15	13	32	1.86
68922--69062	48	2.9	48	98	0	273	44	8	25	21	1.80
68956--69034	26	3.2	26	69	20	87	43	10	25	21	1.84
68934--69056	22	5.2	22	68	21	88	45	6	27	20	1.75

Tables:   1

The End!