Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022496.1 Corchorus olitorius cultivar O-4 contig22529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33199

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1159--1563
199
2.0
200
94
2
708
43
8
12
36
1.72
2066--2111
21
2.1
21
84
11
58
28
17
10
43
1.82
2160--2232
22
3.3
21
72
14
67
31
19
10
38
1.86
4285--4331
22
2.1
22
88
0
67
42
14
6
36
1.72
4315--4567
22
11.7
22
74
11
116
33
15
8
42
1.76
4337--4421
23
3.7
23
83
9
86
41
15
3
40
1.64
4320--4567
44
5.7
43
72
19
133
34
14
8
42
1.77
13139--13184
23
2.0
24
83
12
60
36
21
10
30
1.88
13135--13188
24
2.3
25
78
18
62
38
20
9
31
1.84
14406--14529
63
2.0
63
93
0
212
31
10
14
43
1.79
15462--15530
5
15.4
5
77
22
82
23
21
0
55
1.44
15467--15534
13
5.2
13
86
13
72
23
22
0
54
1.45
15462--15530
18
3.7
18
88
11
111
23
21
0
55
1.44
15532--15567
2
18.0
2
100
0
72
50
0
0
50
1.00
16644--16687
23
1.9
23
100
0
88
31
22
25
20
1.98
26005--26057
25
2.1
25
86
6
72
37
15
18
28
1.91
32546--32576
5
6.2
5
92
0
53
3
22
35
38
1.71

Tables:   1

The End!