Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022498.1 Corchorus olitorius cultivar O-4 contig22531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12466

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
849--940
31
2.9
31
78
3
103
19
20
23
35
1.95
1143--1180
2
19.0
2
100
0
76
50
50
0
0
1.00
4984--5027
17
2.6
17
85
3
54
13
4
0
81
0.83
4984--5028
16
2.7
18
80
13
51
13
4
0
82
0.82
4974--5015
21
2.0
21
86
9
59
14
4
2
78
1.01
5541--5634
46
2.0
46
97
0
179
32
25
11
29
1.91
5807--5888
23
3.5
23
76
18
96
50
7
4
37
1.52
8636--8694
19
3.0
19
80
9
73
37
8
18
35
1.81
8636--8693
21
2.9
20
84
5
73
37
8
18
34
1.82
9912--9953
20
2.1
20
95
0
75
30
23
14
30
1.94
9951--10057
56
2.0
55
87
8
159
31
16
20
30
1.95
10776--10819
22
2.0
22
90
0
70
13
13
22
50
1.77
10775--10830
22
2.7
20
78
10
67
14
16
21
48
1.81

Tables:   1

The End!