Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022503.1 Corchorus olitorius cultivar O-4 contig22536, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19227
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30


Found at i:3063 original size:5 final size:5

Alignment explanation


    Indices: 3053--3078  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       3043 CTTTTGATCA

                                           
       3053 AATCC AATCC AATCC AATCC AATCC A
          1 AATCC AATCC AATCC AATCC AATCC A

       3079 CCATTTTCTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.42, C:0.38, G:0.00, T:0.19


Consensus pattern (5 bp):   
AATCC

Found at i:11784 original size:1 final size:1

Alignment explanation


    Indices: 11778--11806  Score: 58
    Period size: 1  Copynumber: 29.0  Consensus size: 1

      11768 AAGTCTGTAT

                                         
      11778 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
          1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG

      11807 TCAAGAAAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   28  1.00

ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00


Consensus pattern (1 bp):   
G

Done.