Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022504.1 Corchorus olitorius cultivar O-4 contig22537, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14165
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:11096 original size:28 final size:28

Alignment explanation


    Indices: 11056--11112  Score: 105
    Period size: 28  Copynumber: 2.0  Consensus size: 28

      11046 ACCAACTATT

                         *              
      11056 GTATACTCTCTCCGTTCTCATAAAAACA
          1 GTATACTCTCTCCATTCTCATAAAAACA

                                        
      11084 GTATACTCTCTCCATTCTCATAAAAACA
          1 GTATACTCTCTCCATTCTCATAAAAACA

             
      11112 G
          1 G

      11113 ACAGTTATTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32


Consensus pattern (28 bp):   
GTATACTCTCTCCATTCTCATAAAAACA

Found at i:13969 original size:66 final size:66

Alignment explanation


    Indices: 13863--14060  Score: 396
    Period size: 66  Copynumber: 3.0  Consensus size: 66

      13853 CCAAAATACC

                                                                             
      13863 AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG
          1 AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG

             
      13928 T
         66 T

                                                                             
      13929 AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG
          1 AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG

             
      13994 T
         66 T

                                                                             
      13995 AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG
          1 AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG

             
      14060 T
         66 T

      14061 GCAATCCACA


Statistics
Matches: 132,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  66  132  1.00

ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33


Consensus pattern (66 bp):   
AAACCAAATACATTGATGGTGCGTTTGAGGATAAATGAGAATATGATTTGTGTGTAAAAATATTG
T
Done.