Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022505.1 Corchorus olitorius cultivar O-4 contig22538, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11243
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36


Found at i:4217 original size:25 final size:25

Alignment explanation


    Indices: 4183--4231  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       4173 GATTGATTTG

                                     
       4183 TAGAGACCGAGCGAGAGTGCTCAAA
          1 TAGAGACCGAGCGAGAGTGCTCAAA

                                    
       4208 TAGAGACCGAGCGAGAGTGCTCAA
          1 TAGAGACCGAGCGAGAGTGCTCAA

       4232 GATTGTTTGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.35, C:0.20, G:0.33, T:0.12


Consensus pattern (25 bp):   
TAGAGACCGAGCGAGAGTGCTCAAA

Found at i:6985 original size:2 final size:2

Alignment explanation


    Indices: 6978--7010  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       6968 CATGGTTCTT

                                                             
       6978 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       7011 TATCATGCAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.