Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022506.1 Corchorus olitorius cultivar O-4 contig22539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1825
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34


Found at i:1484 original size:46 final size:46

Alignment explanation


    Indices: 1427--1545  Score: 202
    Period size: 46  Copynumber: 2.6  Consensus size: 46

       1417 CATGAAATGG

                  *                                *      
       1427 TAAGTGTTTTATGAAGTTTTTGAATTAGGAATTTACAATTCATAAC
          1 TAAGTGCTTTATGAAGTTTTTGAATTAGGAATTTACAATACATAAC

                                                          
       1473 TAAGTGCTTTATGAAGTTTTTGAATTAGGAATTTACAATACATAAC
          1 TAAGTGCTTTATGAAGTTTTTGAATTAGGAATTTACAATACATAAC

                             *         
       1519 TAAGTGCTTTATGAATGGTTTTGAATT
          1 TAAGTGCTTTATGAA-GTTTTTGAATT

       1546 TATGCAGAGT


Statistics
Matches: 69,  Mismatches: 3, Indels: 1
        0.95            0.04        0.01

Matches are distributed among these distances:
  46   59  0.86
  47   10  0.14

ACGTcount: A:0.34, C:0.07, G:0.17, T:0.43


Consensus pattern (46 bp):   
TAAGTGCTTTATGAAGTTTTTGAATTAGGAATTTACAATACATAAC
Done.