Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022508.1 Corchorus olitorius cultivar O-4 contig22541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64308

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1096--1504
204
2.0
200
94
2
721
44
8
11
36
1.70
5107--5153
9
5.1
9
85
14
53
51
6
0
42
1.27
11086--11166
31
2.5
33
88
10
130
41
7
3
46
1.49
16520--16602
22
3.8
21
76
17
73
59
1
1
38
1.13
16522--16570
25
2.0
25
84
8
64
59
0
0
40
0.98
17032--17166
67
2.0
67
97
0
252
24
8
17
48
1.75
19043--19392
175
2.0
175
93
0
592
37
12
10
40
1.76
19473--19802
178
1.9
178
88
2
511
34
13
16
35
1.88
29412--29455
18
2.4
18
88
0
61
36
4
31
27
1.77
33897--34006
45
2.4
45
84
4
141
33
24
23
18
1.97
36742--36788
24
1.9
25
86
4
69
14
23
25
36
1.93
38593--38816
22
10.0
22
71
13
122
34
9
19
36
1.84
38593--39272
66
10.3
66
68
15
220
38
10
16
34
1.83
38834--38995
44
3.7
43
76
7
146
37
9
16
37
1.81
38853--39247
22
17.8
22
70
16
128
38
10
16
34
1.82
39372--39550
22
8.8
21
67
20
96
40
9
11
37
1.74
39372--39471
44
2.3
42
83
8
121
39
10
12
39
1.76
39579--39647
22
3.1
22
87
0
93
34
13
14
37
1.85
39599--39656
22
2.6
23
84
13
77
36
12
13
37
1.82
39797--39842
22
2.1
21
84
11
58
54
4
15
26
1.59
48832--48880
22
2.2
22
96
0
89
28
28
28
14
1.95
51572--51624
27
2.0
27
88
0
79
15
26
41
16
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51581--51633
27
2.0
27
84
0
70
13
28
39
18
1.88
61219--61252
17
2.1
17
88
5
52
35
20
14
29
1.93
63286--63333
23
2.1
23
84
0
60
25
8
35
31
1.85
64280--64308
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!