Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022512.1 Corchorus olitorius cultivar O-4 contig22545, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64879

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7937--8197
107
2.5
105
84
6
352
42
9
8
40
1.67
17198--17240
20
2.2
20
91
0
68
69
0
9
20
1.15
17189--17232
16
2.8
15
86
10
61
70
0
6
22
1.11
17202--17244
12
3.6
11
81
12
50
72
0
6
20
1.08
17230--17292
24
2.6
24
84
0
90
57
0
17
25
1.40
17197--17292
8
12.5
8
71
12
67
61
0
14
23
1.33
17316--17421
4
26.5
4
66
21
53
66
0
8
24
1.26
17344--17414
19
3.4
19
72
20
70
67
0
9
22
1.20
17318--17420
44
2.3
45
90
6
158
65
0
8
25
1.28
18844--18963
54
2.2
54
93
0
204
27
20
20
30
1.98
18929--19518
35
16.6
35
89
3
849
42
18
12
26
1.86
19517--19902
54
7.2
53
79
4
389
30
23
17
28
1.97
19517--19889
161
2.3
159
83
6
457
30
23
18
27
1.97
19498--19896
215
1.9
215
85
5
565
32
23
17
27
1.96
19920--20026
54
2.0
53
82
7
128
35
19
18
26
1.95
19988--20065
39
2.0
39
90
5
122
33
21
23
21
1.97
19939--20118
92
1.9
93
93
1
308
35
20
18
25
1.95
21222--21300
37
2.0
40
83
7
101
36
12
13
36
1.83
24530--24790
8
33.1
8
67
13
105
62
1
11
23
1.37
24513--24594
4
20.2
4
70
15
53
71
1
6
20
1.14
24666--24794
4
32.5
4
66
21
58
65
1
7
24
1.27
24666--24750
23
3.3
26
77
14
79
64
2
8
24
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24740--24796
26
2.2
25
84
9
71
68
0
7
24
1.14
28628--28810
66
2.8
66
87
0
267
34
16
27
21
1.95
32777--32849
34
2.1
34
97
0
137
21
20
15
42
1.89
36393--36515
31
4.0
31
98
0
237
19
34
0
45
1.51
47158--47212
24
2.3
24
96
0
101
41
12
7
38
1.71
47257--47292
17
2.1
17
100
0
72
33
5
38
22
1.77
47875--47913
6
6.5
6
93
0
60
46
0
33
20
1.51
48034--48069
6
6.0
6
93
0
54
44
0
33
22
1.53
47817--48130
156
2.0
160
93
3
546
37
12
19
30
1.89
51949--51989
2
21.0
2
85
5
57
46
0
0
53
1.00
51949--51992
17
2.6
17
85
3
63
45
0
0
54
0.99
51955--51994
21
1.9
21
100
0
80
42
0
0
57
0.98
56665--56702
2
18.5
2
94
5
67
50
2
0
47
1.15
57398--57446
2
24.5
2
95
0
89
2
0
46
51
1.12

Tables:   1

The End!