Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022517.1 Corchorus olitorius cultivar O-4 contig22550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73887

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--229
35
2.1
35
100
0
150
41
17
17
24
1.90
2741--2766
12
2.2
12
100
0
52
42
15
7
34
1.75
8481--8511
15
2.0
16
93
6
55
29
38
0
32
1.57
9832--10052
45
4.9
45
90
5
329
45
33
8
12
1.72
9938--10022
25
3.6
25
68
22
83
47
36
9
7
1.63
10076--10145
35
2.0
35
94
0
122
38
27
7
27
1.82
10061--10240
90
2.0
90
98
0
351
37
26
7
28
1.83
10166--10375
35
6.0
35
69
19
141
38
31
5
24
1.79
10197--10284
43
2.1
42
97
2
167
31
35
4
28
1.77
10873--10918
23
2.0
23
100
0
92
26
21
4
47
1.69
10875--10924
23
2.5
20
84
15
59
24
22
4
50
1.66
18409--18486
39
2.0
39
89
0
120
25
10
26
37
1.88
21295--21322
4
7.0
4
100
0
56
75
0
25
0
0.81
25473--25507
17
2.1
17
94
0
61
25
0
0
74
0.82
25869--25915
17
2.7
18
84
12
62
27
23
0
48
1.51
27196--27220
12
2.1
12
100
0
50
24
8
36
32
1.84
48606--48750
72
2.0
72
100
0
290
37
19
13
29
1.90
49254--49284
15
2.1
15
93
0
53
9
9
6
74
1.23
49261--49299
15
2.6
15
87
0
51
7
12
10
69
1.37
59878--60183
48
6.4
48
83
7
372
23
31
11
33
1.91
59878--60196
96
3.3
97
86
4
425
23
30
11
33
1.91
62306--62369
31
2.1
31
96
0
119
29
20
14
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62437--62485
24
2.0
24
100
0
98
28
14
16
40
1.87
71439--71474
18
2.0
18
94
0
63
36
2
27
33
1.72
71479--71721
135
1.8
135
86
3
355
31
18
25
24
1.97
72483--72508
5
5.2
5
100
0
52
61
0
0
38
0.96

Tables:   1

The End!