genome.fa.s22518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022518.1 Corchorus olitorius cultivar O-4 contig22551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20413

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1670--1717	24	2.0	25	83	4	62	37	22	6	33	1.80
13179--13206	2	14.0	2	100	0	56	50	0	0	50	1.00
16458--16511	21	2.6	21	96	0	99	50	29	3	16	1.63
16549--16733	53	3.3	53	75	16	192	42	24	10	22	1.84
16596--16680	21	4.0	21	78	1	89	43	25	11	18	1.84
16458--16632	74	2.4	74	89	1	280	44	25	9	20	1.81
16458--16654	74	2.7	74	85	3	236	44	25	9	19	1.81
16522--16748	116	1.9	117	90	0	357	42	23	12	21	1.87
16481--16834	190	1.9	191	88	1	539	43	22	10	22	1.84
16639--16810	74	2.3	75	85	3	231	41	21	11	25	1.86
16639--16830	74	2.6	74	83	2	206	42	21	11	25	1.86
16739--16977	111	2.2	111	87	5	358	41	18	10	30	1.84
16739--16976	56	4.3	56	90	2	347	41	18	10	29	1.84
16894--17233	130	2.6	132	81	7	412	41	19	11	26	1.86
16664--17344	368	1.8	368	92	1	1150	41	19	10	27	1.84
17035--17180	74	1.9	75	85	8	199	43	21	11	23	1.85
16982--17103	53	2.3	53	92	2	201	43	26	10	19	1.83
17130--17405	56	5.1	56	80	6	273	41	15	11	31	1.83
17130--17366	112	2.2	107	86	4	312	42	15	10	31	1.81
19073--19114	19	2.1	21	86	8	61	33	4	2	59	1.31
19212--19282	35	2.0	35	100	0	142	29	8	25	36	1.85
20061--20085	10	2.5	10	100	0	50	24	8	16	52	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20201--20263	11	5.9	11	72	7	58	39	3	1	55	1.25

Tables:   1

The End!