Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022520.1 Corchorus olitorius cultivar O-4 contig22553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73251
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:11897 original size:42 final size:42
Alignment explanation
Indices: 11843--12035 Score: 273
Period size: 42 Copynumber: 4.6 Consensus size: 42
11833 AGAAGTGCTA
* * *
11843 GGACCTTGTTGAGGCTGACTTTGGCCAGGGAGAGCAGTAGTT
1 GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAGTAGTT
* * *
11885 GCAACTTTTTGAGGCTGAGTCTGGGCAGGGAGAGCAGTTA-TT
1 GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAG-TAGTT
*
11927 GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAGTAATT
1 GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAGTAGTT
*
11969 GGACCTTTCTGAGGCTGAGTTTGGGCAGGGAGAGCAGT-GATT
1 GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAGTAG-TT
*
12011 GGACCTTTTTGAGGCTGATTTTGGG
1 GGACCTTTTTGAGGCTGAGTTTGGG
12036 GCAAATCAGA
Statistics
Matches: 135, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.01
42 131 0.97
43 2 0.01
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.29
Consensus pattern (42 bp):
GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAGTAGTT
Found at i:12035 original size:84 final size:84
Alignment explanation
Indices: 11775--12035 Score: 310
Period size: 84 Copynumber: 3.1 Consensus size: 84
11765 TGCCGCGACA
* * ** ** * *
11775 GATTTTGGG-AGGGGAGAGCAGTAATTGGTCCTTTCTGAGGCTGATTATTGGTTA-AAACAGAAG
1 GATTTTGGGCA-GGGAGAGCAGTAATTGGACCTTTCTGAGGCTGAGT-TTGGGCAGGGAGAGCAG
* * *
11838 TGCTAGGACCTTGTTGAGGCT
64 TGATTGGACCTTTTTGAGGCT
* * * * * * * *
11859 GACTTTGGCCAGGGAGAGCAGTAGTTGCAACTTTTTGAGGCTGAGTCTGGGCAGGGAGAGCAGTT
1 GATTTTGGGCAGGGAGAGCAGTAATTGGACCTTTCTGAGGCTGAGTTTGGGCAGGGAGAGCAGTG
11924 ATTGGACCTTTTTGAGGCT
66 ATTGGACCTTTTTGAGGCT
*
11943 GAGTTTGGGCAGGGAGAGCAGTAATTGGACCTTTCTGAGGCTGAGTTTGGGCAGGGAGAGCAGTG
1 GATTTTGGGCAGGGAGAGCAGTAATTGGACCTTTCTGAGGCTGAGTTTGGGCAGGGAGAGCAGTG
12008 ATTGGACCTTTTTGAGGCT
66 ATTGGACCTTTTTGAGGCT
12027 GATTTTGGG
1 GATTTTGGG
12036 GCAAATCAGA
Statistics
Matches: 147, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
83 4 0.03
84 142 0.97
85 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (84 bp):
GATTTTGGGCAGGGAGAGCAGTAATTGGACCTTTCTGAGGCTGAGTTTGGGCAGGGAGAGCAGTG
ATTGGACCTTTTTGAGGCT
Found at i:12109 original size:42 final size:41
Alignment explanation
Indices: 11843--12114 Score: 224
Period size: 42 Copynumber: 6.5 Consensus size: 41
11833 AGAAGTGCTA
* * * *
11843 GGACCTTGTTGAGGCTGACTTTGGCCAGGGAGAGCAGTAGTT
1 GGACCTT-TTGAGGCTGATTTTGGGCAGGGAGAGCAGCAATT
* * * * **
11885 GCAACTTTTTGAGGCTGAGTCTGGGCAGGGAGAGCAGTTATT
1 G-GACCTTTTGAGGCTGATTTTGGGCAGGGAGAGCAGCAATT
* *
11927 GGACCTTTTTGAGGCTGAGTTTGGGCAGGGAGAGCAGTAATT
1 GGACC-TTTTGAGGCTGATTTTGGGCAGGGAGAGCAGCAATT
* **
11969 GGACCTTTCTGAGGCTGAGTTTGGGCAGGGAGAGCAGTGATT
1 GGACCTTT-TGAGGCTGATTTTGGGCAGGGAGAGCAGCAATT
* * * * *
12011 GGACCTTTTTGAGGCTGATTTTGGGGCA--AATCAGAAGCGATA
1 GGACC-TTTTGAGGCTGATTTT-GGGCAGGGA-GAGCAGCAATT
* ** * *
12053 GGGCCTTGTTGAGGCTGATTTTGGGTGGGGATAGCACCAATT
1 GGACCTT-TTGAGGCTGATTTTGGGCAGGGAGAGCAGCAATT
12095 GGACCTTTTGGAGGCTGATT
1 GGACCTTTT-GAGGCTGATT
12115 CTTAGCTGAA
Statistics
Matches: 192, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
41 13 0.07
42 166 0.86
43 13 0.07
ACGTcount: A:0.20, C:0.14, G:0.37, T:0.29
Consensus pattern (41 bp):
GGACCTTTTGAGGCTGATTTTGGGCAGGGAGAGCAGCAATT
Found at i:12141 original size:42 final size:41
Alignment explanation
Indices: 12095--12364 Score: 148
Period size: 42 Copynumber: 6.4 Consensus size: 41
12085 AGCACCAATT
* *
12095 GGACCTTTTGGAGGCTGATTCTTAGCTGAAATAGAAGTGGTA
1 GGACCTTTT-GAGGCTGATTCTTGGCTGAAACAGAAGTGGTA
* * * * **
12137 GGACCTAATTGACGCTGATTCTGGGATGAAACAGAAACGGTA
1 GGACCT-TTTGAGGCTGATTCTTGGCTGAAACAGAAGTGGTA
* * ** ** * * **
12179 GAACCTTGTTGGGGCTGATT-TTGGGAGGGTAGAGCAGTATTA
1 GGACCTT-TTGAGGCTGATTCTT-GGCTGAAACAGAAGTGGTA
* * *
12221 GAACCTTTTTTAGGCTGATTTTTGGCTGAAACAGAAGTGGTA
1 GGACC-TTTTGAGGCTGATTCTTGGCTGAAACAGAAGTGGTA
** * * * *** *
12263 GGACCTTGTTGAGGCTGATT-TTGGGAGAGTAGAGCAGCATTT
1 GGACCTT-TTGAGGCTGATTCTTGGCTGA-AACAGAAGTGGTA
* * *
12305 GGACCTTTCTGAGGCTGATTTTTGGCTGAAACAGAAGTGCTG
1 GGACCTTT-TGAGGCTGATTCTTGGCTGAAACAGAAGTGGTA
12347 GGACCTTGTTGAGGCTGA
1 GGACCTT-TTGAGGCTGA
12365 GTTTGGGCCT
Statistics
Matches: 166, Mismatches: 52, Indels: 20
0.70 0.22 0.08
Matches are distributed among these distances:
41 10 0.06
42 143 0.86
43 13 0.08
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.30
Consensus pattern (41 bp):
GGACCTTTTGAGGCTGATTCTTGGCTGAAACAGAAGTGGTA
Found at i:12141 original size:126 final size:125
Alignment explanation
Indices: 12011--12290 Score: 321
Period size: 126 Copynumber: 2.2 Consensus size: 125
12001 AGCAGTGATT
* * **
12011 GGACCTTTTTGAGGCTGATTTTGGG-GCAAATCAGAAGCGATAGGGCCTTGTTGAGGCTGATTTT
1 GGACCTTATTGAGGCTGATTTTGGGAG-AAA-CAGAAACGATAGAACCTTGTTGAGGCTGATTTT
* * * *
12075 GGGTGGGGATAGCACCAATT-GGACCTTTTGGAGGCTGATTCTTAGCTGAAATAGAAGTGGTA
64 GGGAGGGGAGAGCA-CAATTAGAACCTTTTGGAGGCTGATTCTTAGCTGAAACAGAAGTGGTA
* * * * *
12137 GGACCTAATTGACGCTGATTCTGGGATGAAACAGAAACGGTAGAACCTTGTTGGGGCTGATTTTG
1 GGACCTTATTGAGGCTGATTTTGGGA-GAAACAGAAACGATAGAACCTTGTTGAGGCTGATTTTG
* ** ** * *
12202 GGAGGGTAGAGCAGTATTAGAACCTTTTTTAGGCTGATTTTTGGCTGAAACAGAAGTGGTA
65 GGAGGGGAGAGCACAATTAGAACCTTTTGGAGGCTGATTCTTAGCTGAAACAGAAGTGGTA
*
12263 GGACCTTGTTGAGGCTGATTTTGGGAGA
1 GGACCTTATTGAGGCTGATTTTGGGAGA
12291 GTAGAGCAGC
Statistics
Matches: 127, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
125 5 0.04
126 118 0.93
127 3 0.02
128 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (125 bp):
GGACCTTATTGAGGCTGATTTTGGGAGAAACAGAAACGATAGAACCTTGTTGAGGCTGATTTTGG
GAGGGGAGAGCACAATTAGAACCTTTTGGAGGCTGATTCTTAGCTGAAACAGAAGTGGTA
Found at i:12154 original size:84 final size:84
Alignment explanation
Indices: 12008--12161 Score: 186
Period size: 84 Copynumber: 1.8 Consensus size: 84
11998 GAGAGCAGTG
* * * ** *
12008 ATTGGACCTTTTTGAGGCTGATTTTGGGGCAAATCAGAAGCGATAGGGCCTTGTTGAGGCTGATT
1 ATTGGACCTTTTGGAGGCTGATTTTGCGGCAAATCAGAAGCGATAGGACCTAATTGACGCTGATT
*
12073 TTGGGTGGGGATAGCACCA
66 CTGGGTGGGGATAGCACCA
* * *
12092 ATTGGACCTTTTGGAGGCTGATTCTTAGCTG-AAAT-AGAAGTGGTAGGACCTAATTGACGCTGA
1 ATTGGACCTTTTGGAGGCTGATT-TT-GCGGCAAATCAGAAGCGATAGGACCTAATTGACGCTGA
12155 TTCTGGG
64 TTCTGGG
12162 ATGAAACAGA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
84 50 0.86
85 6 0.10
86 2 0.03
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.31
Consensus pattern (84 bp):
ATTGGACCTTTTGGAGGCTGATTTTGCGGCAAATCAGAAGCGATAGGACCTAATTGACGCTGATT
CTGGGTGGGGATAGCACCA
Found at i:12239 original size:84 final size:84
Alignment explanation
Indices: 12163--12371 Score: 274
Period size: 84 Copynumber: 2.5 Consensus size: 84
12153 GATTCTGGGA
* * *
12163 TGAAACAGAAACGGTAGAACCTTGTTGGGGCTGATTTTGGGAGGGTAGAGCAGTATTAGAACCTT
1 TGAAACAGAAACGGTAGAACCTTGTTGAGGCTGATTTTGGGAGAGTAGAGCAGCATTAGAACCTT
* *
12228 TTTTAGGCTGATTTTTGGC
66 TCTGAGGCTGATTTTTGGC
** * * *
12247 TGAAACAGAAGTGGTAGGACCTTGTTGAGGCTGATTTTGGGAGAGTAGAGCAGCATTTGGACCTT
1 TGAAACAGAAACGGTAGAACCTTGTTGAGGCTGATTTTGGGAGAGTAGAGCAGCATTAGAACCTT
12312 TCTGAGGCTGATTTTTGGC
66 TCTGAGGCTGATTTTTGGC
** * * * *
12331 TGAAACAGAAGTGCTGGGACCTTGTTGAGGCTGAGTTTGGG
1 TGAAACAGAAACGGTAGAACCTTGTTGAGGCTGATTTTGGG
12372 CCTGGACAGA
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 112 1.00
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.31
Consensus pattern (84 bp):
TGAAACAGAAACGGTAGAACCTTGTTGAGGCTGATTTTGGGAGAGTAGAGCAGCATTAGAACCTT
TCTGAGGCTGATTTTTGGC
Found at i:12394 original size:84 final size:84
Alignment explanation
Indices: 12223--12395 Score: 213
Period size: 84 Copynumber: 2.1 Consensus size: 84
12213 CAGTATTAGA
* * * *
12223 ACCTTTTTTAGGCTGATTTTTGGCTGAAACAGAAGTGGTAGGACCTTGTTGAGGCTGATTTTGGG
1 ACCTTTCTGAGGCTGATTTTTGGCTGAAACAGAAGTGCTAGGACCTTGTTGAGGCTGAGTTTGGG
* * * * **
12288 AGAGTAGAGCAGCATTTGG
66 ACAGGACAGAAGCACGTGG
*
12307 ACCTTTCTGAGGCTGATTTTTGGCTGAAACAGAAGTGCTGGGACCTTGTTGAGGCTGAGTTTGGG
1 ACCTTTCTGAGGCTGATTTTTGGCTGAAACAGAAGTGCTAGGACCTTGTTGAGGCTGAGTTTGGG
* *
12372 CCTGGACAGAAGCAACGT-G
66 ACAGGACAGAAGC-ACGTGG
12391 ACCTT
1 ACCTT
12396 GTTGGCTTTG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
84 73 0.97
85 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.31
Consensus pattern (84 bp):
ACCTTTCTGAGGCTGATTTTTGGCTGAAACAGAAGTGCTAGGACCTTGTTGAGGCTGAGTTTGGG
ACAGGACAGAAGCACGTGG
Found at i:19118 original size:39 final size:39
Alignment explanation
Indices: 19074--19154 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
19064 AAAAATAACA
19074 ATCACAAACAGAAGAAAGAAAGTAACAAAAAACTAAAGT
1 ATCACAAACAGAAGAAAGAAAGTAACAAAAAACTAAAGT
19113 ATCACAAACAGAAGAAAGAAAGTAACAAAAAACTAAAGT
1 ATCACAAACAGAAGAAAGAAAGTAACAAAAAACTAAAGT
19152 ATC
1 ATC
19155 CTGTCAACCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.63, C:0.14, G:0.12, T:0.11
Consensus pattern (39 bp):
ATCACAAACAGAAGAAAGAAAGTAACAAAAAACTAAAGT
Found at i:22527 original size:20 final size:21
Alignment explanation
Indices: 22504--22542 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22494 CACATTTTTT
22504 AAAATGACGCCAC-GCCAAGA
1 AAAATGACGCCACGGCCAAGA
*
22524 AAAATGATGCCACGGCCAA
1 AAAATGACGCCACGGCCAA
22543 AATTTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.28, G:0.21, T:0.08
Consensus pattern (21 bp):
AAAATGACGCCACGGCCAAGA
Found at i:22727 original size:121 final size:123
Alignment explanation
Indices: 22553--22777 Score: 305
Period size: 121 Copynumber: 1.8 Consensus size: 123
22543 AATTTAATAA
* * *
22553 CCAAGATTTACTAACAAGATATATCACCGCCACGTTTCCAGCCATAGGTCATGTCCTAATTTATA
1 CCAAGATTTACTAACAAGATAAAACACCGCCACGTTTCCAGCCATAAGTCATGTCCTAATTTATA
* *
22618 TGAGCTTTG-CGTGAC-GAAAGCAATGCACACTCAACAATAAACTGCCACAGACCACAG
66 TGAGCTCTGAC-TGACAAAAAGCAATGCACACTCAACAATAAACTGCCACAGACCACAG
* ** * *
22675 CCAAGATTTACTAACAAGA-AAAACGA-CGCCACGTTTCCTGCTGTAAGTCATGTCCTGATTTCT
1 CCAAGATTTACTAACAAGATAAAAC-ACCGCCACGTTTCCAGCCATAAGTCATGTCCTAATTTAT
*
22738 ATGAGCTCTGACTGACAAAAAGCTATGCACACTCAACAAT
65 ATGAGCTCTGACTGACAAAAAGCAATGCACACTCAACAAT
22778 TCATAATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
121 47 0.53
122 42 0.47
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (123 bp):
CCAAGATTTACTAACAAGATAAAACACCGCCACGTTTCCAGCCATAAGTCATGTCCTAATTTATA
TGAGCTCTGACTGACAAAAAGCAATGCACACTCAACAATAAACTGCCACAGACCACAG
Found at i:34233 original size:7 final size:7
Alignment explanation
Indices: 34216--34252 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
34206 TCATTTAAAC
34216 AAAAAAG
1 AAAAAAG
34223 -AAAAAG
1 AAAAAAG
34229 AAAAAAG
1 AAAAAAG
34236 AAAAAAG
1 AAAAAAG
34243 AAAAAAG
1 AAAAAAG
34250 AAA
1 AAA
34253 TTATTTACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:37492 original size:25 final size:25
Alignment explanation
Indices: 37453--37500 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
37443 AGTCAAAGTA
37453 AAAGCCTTTCTCTAATAGAATTTTC
1 AAAGCCTTTCTCTAATAGAATTTTC
37478 AAAGCCTTT-TCCTAATAGAATTT
1 AAAGCCTTTCT-CTAATAGAATTT
37501 GATCCAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (25 bp):
AAAGCCTTTCTCTAATAGAATTTTC
Found at i:39299 original size:23 final size:22
Alignment explanation
Indices: 39244--39317 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 22
39234 GGAGGTTTTT
39244 AAATTATCATAATGTGGTTATCA
1 AAATT-TCATAATGTGGTTATCA
* *
39267 AACATCTCATAGTGTTGGTTATCA
1 AA-ATTTCATAATG-TGGTTATCA
* * **
39291 AAATTTCATTAGGAAGTTATCA
1 AAATTTCATAATGTGGTTATCA
39313 AAATT
1 AAATT
39318 ATAGTGAGGT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
22 12 0.29
23 16 0.39
24 13 0.32
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (22 bp):
AAATTTCATAATGTGGTTATCA
Found at i:39312 original size:22 final size:22
Alignment explanation
Indices: 39259--39481 Score: 145
Period size: 22 Copynumber: 10.2 Consensus size: 22
39249 ATCATAATGT
* **
39259 GGTTATCAAACATCTCATAGTGTT
1 GGTTATCAAA-ATTTCATAG-GAA
39283 GGTTATCAAAATTTCATTAGGAA
1 GGTTATCAAAATTTCA-TAGGAA
39306 -GTTATCAAAA-TT-ATAGTG-A
1 GGTTATCAAAATTTCATAG-GAA
* * *
39325 GGTCT-TCAAAATTCCTTAGGGA
1 GGT-TATCAAAATTTCATAGGAA
* *
39347 GGTTAACAAAATTTCATAAGAA
1 GGTTATCAAAATTTCATAGGAA
** * **
39369 GGTTAAAAAAAATT-ATAAAAA
1 GGTTATCAAAATTTCATAGGAA
* * * * *
39390 GGTTCTCGAAATTCCATAGTAT
1 GGTTATCAAAATTTCATAGGAA
* * *
39412 CGTTATTAAAATTTGATAGGAA
1 GGTTATCAAAATTTCATAGGAA
*
39434 GGTTATCAAAATTTCATAAGAA
1 GGTTATCAAAATTTCATAGGAA
39456 GGTTATCAAAATTTCATAAGG-A
1 GGTTATCAAAATTTCAT-AGGAA
39478 GGTT
1 GGTT
39482 GTTAGGGGCC
Statistics
Matches: 154, Mismatches: 35, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
19 4 0.03
20 10 0.06
21 20 0.13
22 99 0.64
23 8 0.05
24 13 0.08
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (22 bp):
GGTTATCAAAATTTCATAGGAA
Found at i:39913 original size:84 final size:85
Alignment explanation
Indices: 39666--39997 Score: 467
Period size: 85 Copynumber: 3.9 Consensus size: 85
39656 CCAATAACTA
* * * *
39666 AAAGTCCCCAAACACAATTT-TAACACAGGGGCAGTTCTTTATCTAAAGTCCTCAAACACATTTA
1 AAAGTCCCCAAACAC-ATTTATAACACAGGGGCAATTCTATCTCAAAAGTCCTCAAACACATTTA
*
39730 TAACACAGAGGCACCTATATC
65 TAACACAGAGGCATCTATATC
* * *
39751 AAAGTCCCCAAACACAATTATAACACATGTGGC-ATCTCTAT-TCCAAAGTCCTCAAACACATTT
1 AAAGTCCCCAAACACATTTATAACACA-GGGGCAAT-TCTATCTCAAAAGTCCTCAAACACATTT
*
39814 ATAACACAAAGGCATCTATATC
64 ATAACACAGAGGCATCTATATC
* *
39836 AAAGTCCCCAAACACATTTATAACACAGGGGCAATTCTCTCT-AAAAGTCCTCAGACACATTTAT
1 AAAGTCCCCAAACACATTTATAACACAGGGGCAATTCTATCTCAAAAGTCCTCAAACACATTTAT
*
39900 AACACAGAGGCATCCATA-C
66 AACACAGAGGCATCTATATC
**
39919 TAAAGTCCCCAAACACATTTATAACACAGGGGCACCTCTATCTCAAAAGTCCTCAAACACATTTA
1 -AAAGTCCCCAAACACATTTATAACACAGGGGCAATTCTATCTCAAAAGTCCTCAAACACATTTA
39984 TAACACAGAGGCAT
65 TAACACAGAGGCAT
39998 TTCTATTTAT
Statistics
Matches: 222, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
83 1 0.00
84 86 0.39
85 127 0.57
86 8 0.04
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (85 bp):
AAAGTCCCCAAACACATTTATAACACAGGGGCAATTCTATCTCAAAAGTCCTCAAACACATTTAT
AACACAGAGGCATCTATATC
Found at i:39946 original size:169 final size:169
Alignment explanation
Indices: 39666--39997 Score: 503
Period size: 169 Copynumber: 2.0 Consensus size: 169
39656 CCAATAACTA
*
39666 AAAGTCCCCAAACACAATTTTAACACAGGGGCAGTTCTTTATCTAAAGTCCTCAAACACATTTAT
1 AAAGTCCCCAAACACAATTTTAACACAGGGGCAATTC-TTATCTAAAGTCCTCAAACACATTTAT
* * *
39731 AACACAGAGGCACCTATATCAAAGTCCCCAAACACAATTATAACACATGTGGCATCTCTAT-TCC
65 AACACAGAGGCACCTATATCAAAGTCCCCAAACACAATTATAACACA-GGGGCACCTCTATCTCA
39795 AAAGTCCTCAAACACATTTATAACACAAAGGCATCTATATC
129 AAAGTCCTCAAACACATTTATAACACAAAGGCATCTATATC
* *
39836 AAAGTCCCCAAACAC-ATTTATAACACAGGGGCAATTC-TCTCTAAAAGTCCTCAGACACATTTA
1 AAAGTCCCCAAACACAATTT-TAACACAGGGGCAATTCTTATCT-AAAGTCCTCAAACACATTTA
*
39899 TAACACAGAGGCATCC-ATA-CTAAAGTCCCCAAACACATTTATAACACAGGGGCACCTCTATCT
64 TAACACAGAGGCA-CCTATATC-AAAGTCCCCAAACACAATTATAACACAGGGGCACCTCTATCT
*
39962 CAAAAGTCCTCAAACACATTTATAACACAGAGGCAT
127 CAAAAGTCCTCAAACACATTTATAACACAAAGGCAT
39998 TTCTATTTAT
Statistics
Matches: 149, Mismatches: 8, Indels: 11
0.89 0.05 0.07
Matches are distributed among these distances:
168 16 0.11
169 100 0.67
170 33 0.22
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (169 bp):
AAAGTCCCCAAACACAATTTTAACACAGGGGCAATTCTTATCTAAAGTCCTCAAACACATTTATA
ACACAGAGGCACCTATATCAAAGTCCCCAAACACAATTATAACACAGGGGCACCTCTATCTCAAA
AGTCCTCAAACACATTTATAACACAAAGGCATCTATATC
Found at i:40043 original size:2 final size:2
Alignment explanation
Indices: 40038--40100 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
40028 TATATATATA
40038 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
40080 TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG T
40101 AACAAGGGCC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:41707 original size:20 final size:21
Alignment explanation
Indices: 41623--41740 Score: 94
Period size: 22 Copynumber: 5.5 Consensus size: 21
41613 GATAATTACC
* * *
41623 TATGAAACTGTGATAAGCTTCA
1 TATGAAA-TTTGATAACCTTCT
***
41645 TATGAAACTTTGATAACCTAAA
1 TATGAAA-TTTGATAACCTTCT
* *
41667 TATGAAATTTTAATAAACCTTCC
1 TATGAAA-TTTGAT-AACCTTCT
41690 TATGAAATTTG-TAACCTTCT
1 TATGAAATTTGATAACCTTCT
**
41710 TATGATTTTTGATAACCTTCT
1 TATGAAATTTGATAACCTTCT
*
41731 TATGAGATTT
1 TATGAAATTT
41741 TGTTAATCTC
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
20 16 0.20
21 18 0.23
22 33 0.42
23 12 0.15
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (21 bp):
TATGAAATTTGATAACCTTCT
Found at i:41727 original size:21 final size:20
Alignment explanation
Indices: 41682--41740 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
41672 AATTTTAATA
*
41682 AACCTTCCTATGAAATTTGT
1 AACCTTCTTATGAAATTTGT
**
41702 AACCTTCTTATGATTTTTGAT
1 AACCTTCTTATGAAATTTG-T
*
41723 AACCTTCTTATGAGATTT
1 AACCTTCTTATGAAATTT
41741 TGTTAATCTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (20 bp):
AACCTTCTTATGAAATTTGT
Found at i:45771 original size:8 final size:8
Alignment explanation
Indices: 45758--45794 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
45748 GGGTTGGCCA
45758 ATAATAAT
1 ATAATAAT
45766 ATAATAAT
1 ATAATAAT
45774 ATAATAAT
1 ATAATAAT
*
45782 ATATATAAC
1 ATA-ATAAT
45791 ATAA
1 ATAA
45795 AAGTCTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (8 bp):
ATAATAAT
Found at i:48510 original size:2 final size:2
Alignment explanation
Indices: 48505--48535 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
48495 TGTGTATGTG
48505 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48536 GACAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:55856 original size:2 final size:2
Alignment explanation
Indices: 55851--55888 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
55841 TTAGTGTGTG
55851 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55889 GCTTATTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:57783 original size:69 final size:69
Alignment explanation
Indices: 57697--57835 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
57687 TATTTGGTAT
*
57697 GATTATTGCTAATGCAGGCACATTTAGATTGTATAAACATGAATTTTAGGTGGCATTGATGTAAG
1 GATTATTGCTAATGCAGGCACATTTAGATTGCATAAACATGAATTTTAGGTGGCATTGATGTAAG
57762 TGCA
66 TGCA
57766 GATTATTGCTAATGCAGGCACATTTAGATTGCATAAACATGAATTTTAGGTGGCATTGATGTAAG
1 GATTATTGCTAATGCAGGCACATTTAGATTGCATAAACATGAATTTTAGGTGGCATTGATGTAAG
57831 TGCA
66 TGCA
57835 G
1 G
57836 GTCTTTGGAG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (69 bp):
GATTATTGCTAATGCAGGCACATTTAGATTGCATAAACATGAATTTTAGGTGGCATTGATGTAAG
TGCA
Found at i:66075 original size:165 final size:165
Alignment explanation
Indices: 65801--66116 Score: 501
Period size: 165 Copynumber: 1.9 Consensus size: 165
65791 AAACCCAGAT
*
65801 TGGGTTCAAACTGGTTCTTCTACAATATTGAGCTCAGAAACTTTACCTACAGAAGAGATGAGCAA
1 TGGGTTCAAACTGGTTCTTCTACAATATTGAGCTCAGAAACTTTACCTACAGAAAAGATGAGCAA
* * *
65866 TCTCCAAGATTCAAAGCCAGACTATGGCTTGAGTGAGGGAGAAATGCCTTCTGAAGATGTCGCAC
66 TCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTCGCAC
65931 TGGCT-CCTCAGGTTGCTGTTAATTCTGAGAATGAA
131 TGGCTGCC-CAGGTTGCTGTTAATTCTGAGAATGAA
* * * *
65966 TGGGTTCAAACTGAG-TCTTCTGCCATATTGAGTTCAGAAACTTTACCTACAGAAAAGATGGGCA
1 TGGGTTCAAACTG-GTTCTTCTACAATATTGAGCTCAGAAACTTTACCTACAGAAAAGATGAGCA
* * *
66030 GTCTCCAAGATTCAAAGCTAGACAATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCA
65 ATCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTCGCA
66095 CTGGCTGCCCAGGTTGCTGTTA
130 CTGGCTGCCCAGGTTGCTGTTA
66117 CAATATTGAG
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
165 135 0.98
166 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (165 bp):
TGGGTTCAAACTGGTTCTTCTACAATATTGAGCTCAGAAACTTTACCTACAGAAAAGATGAGCAA
TCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTCGCAC
TGGCTGCCCAGGTTGCTGTTAATTCTGAGAATGAA
Found at i:66220 original size:129 final size:129
Alignment explanation
Indices: 65990--66242 Score: 411
Period size: 129 Copynumber: 2.0 Consensus size: 129
65980 GTCTTCTGCC
* *
65990 ATATTGAGTTCAGAAACTTTACCTACAGAAAAGATGGGCAGTCTCCAAGATTCAAAGCTAGACAA
1 ATATTGAGTTCAGAAACTTTACCTACAGAAAAGATGGGCAATCTCCAAGATTCAAAGCCAGACAA
* *
66055 TGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTGCCCAGGTTGCTGTTACA
66 TGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTGTTACA
* *
66119 ATATTGAGTTCAGAAACTTTACCTACAGAAGAA-A-GGAGCAATTTCCAAGATTCAAAGCCAGTC
1 ATATTGAGTTCAGAAACTTTACCTACAGAA-AAGATGG-GCAATCTCCAAGATTCAAAGCCAGAC
*
66182 AATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTG
64 AATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTG
66243 CTAATTCTGA
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
128 2 0.02
129 111 0.97
130 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (129 bp):
ATATTGAGTTCAGAAACTTTACCTACAGAAAAGATGGGCAATCTCCAAGATTCAAAGCCAGACAA
TGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTGTTACA
Found at i:66352 original size:294 final size:293
Alignment explanation
Indices: 65821--66737 Score: 1074
Period size: 294 Copynumber: 3.0 Consensus size: 293
65811 CTGGTTCTTC
* * *
65821 TACAATATTGAGCTCAGAAACTTTACCTACAGAAGAGATGAGCAATCTCCAAGATTCAAAGCCAG
1 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAATGAGCAATTTCCAAGATTCAAAGCCAG
* * * *
65886 ACTATGGCTTGAGTGAGGGAGAAATGCCTTCTGAAGATGTCGCACTGGCTCCTCAGGTTGCTGTT
66 ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGTT
* * * *
65951 AATTCTGAGAATGAATGGGTTCAAACTGAGTCTTCTGCCATATTGAGTTCAGAAACTTTACCTAC
131 AATTCTGAAAATGAACGGGTTCAAACTGATTCTTCTACCATATTGAGTTCAGAAACTTTACCTAC
* *
66016 AGAA-AAGATGG-GCAGTCTCCAAGATTCAAAGCTAGACAATGGCTTGAGTAAGAGAGAAATGCC
196 -GAAGAA-A-GGTGCAATCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTAAGAGAGAAATGCC
*
66079 TTCTGAAGATGTTGCACTGGCTGCCCAGGTTGCTGT
258 TTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGT
*
66115 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATTTCCAAGATTCAAAGCCAG
1 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAATGAGCAATTTCCAAGATTCAAAGCCAG
* * *
66180 TCAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTGCT
66 ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGTT
*
66245 AATTCTGAAAATGAA-GGCGTTCAAACTGATTCTTCTACAATATTGAGTTCAGAAACTTTACCTA
131 AATTCTGAAAATGAACGG-GTTCAAACTGATTCTTCTACCATATTGAGTTCAGAAACTTTACCTA
*
66309 CGGAAGAAAGGTGCAATCTCCAAGATTCAAAGCCAGTCAATGGCTTGAGTAAGAGAGAAATGCCT
195 C-GAAGAAAGGTGCAATCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTAAGAGAGAAATGCCT
66374 TCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGCT
259 TCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTG-T
* * * * * * *
66410 AATTCTGAA-AATGAAGTCGCTA-AAACTGATTCTACCATATTGAGTTCAGAAAATTTACCTACA
1 --TAC--AATATTG-AGT-TC-AGAAAC---TT-TACC-TA--CAG--AAG-AAA-TGA---GCA
66473 GATGAGATGAGCAACCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTGAGAGAGAAATGCCTTC
45 -AT----T--------TCCAAGATTCAAAGCCAGACAATGGCTTGAGTGAGAGAGAAATGCCTTC
* * *
66538 GGAAGATGTTGCATTGGCTCCCCTGGTTGCTGTTAATTCTGAAAATGAACGGGTTCAAACTGATT
97 TGAAGATGTTGCACTGGCTCCCCAGGTTGCTGTTAATTCTGAAAATGAACGGGTTCAAACTGATT
* *
66603 CTTCTACCATATTGAGTTCAGAAACTTTACCTAC--AGAAAGGATTAGCAATCTCCATGATCCAA
162 CTTCTACCATATTGAGTTCAGAAACTTTACCTACGAAGAAAGG--T-GCAATCTCCAAGATTCAA
** * *
66666 AGCCAGACAATGGCTTGAGCGAGAGAGAAATGCCTTCTGAAGATGTTGCACCGGCTCCCCAGGCT
224 AGCCAGACAATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTT
66731 GCTGT
289 GCTGT
66736 TA
1 TA
66738 ATTCTGAAAA
Statistics
Matches: 538, Mismatches: 43, Indels: 54
0.85 0.07 0.09
Matches are distributed among these distances:
293 4 0.01
294 264 0.49
295 3 0.01
297 2 0.00
298 3 0.01
299 5 0.01
300 5 0.01
301 1 0.00
303 2 0.00
304 4 0.01
305 2 0.00
307 2 0.00
309 2 0.00
310 3 0.01
311 1 0.00
314 2 0.00
315 2 0.00
319 1 0.00
324 8 0.01
326 2 0.00
327 218 0.41
328 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (293 bp):
TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAATGAGCAATTTCCAAGATTCAAAGCCAG
ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGTT
AATTCTGAAAATGAACGGGTTCAAACTGATTCTTCTACCATATTGAGTTCAGAAACTTTACCTAC
GAAGAAAGGTGCAATCTCCAAGATTCAAAGCCAGACAATGGCTTGAGTAAGAGAGAAATGCCTTC
TGAAGATGTTGCACTGGCTCCCCAGGTTGCTGT
Found at i:66387 original size:165 final size:165
Alignment explanation
Indices: 66115--66750 Score: 949
Period size: 165 Copynumber: 3.9 Consensus size: 165
66105 AGGTTGCTGT
*
66115 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATTTCCAAGATTCAAAGCCAG
1 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATCTCCAAGATTCAAAGCCAG
* *
66180 TCAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTGCT
66 ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGCT
66245 AATTCTGAAAATGAAGGCGTTCAAACTGATTCTTC
131 AATTCTGAAAATGAAGGCGTTCAAACTGATTCTTC
* *
66280 TACAATATTGAGTTCAGAAACTTTACCTACGGAAGAAAGGTGCAATCTCCAAGATTCAAAGCCAG
1 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATCTCCAAGATTCAAAGCCAG
* *
66345 TCAATGGCTTGAGTAAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGCT
66 ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGCT
* * *
66410 AATTCTGAAAATGAAGTCGCTAAAACTGA---TTC
131 AATTCTGAAAATGAAGGCGTTCAAACTGATTCTTC
* * * * * *
66442 TACCATATTGAGTTCAGAAAATTTACCTACAGATGAGATGAGCAACCTCCAAGATTCAAAGCCAG
1 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATCTCCAAGATTCAAAGCCAG
* * * *
66507 ACAATGGCTTGAGTGAGAGAGAAATGCCTTCGGAAGATGTTGCATTGGCTCCCCTGGTTGCTGTT
66 ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGCT
66572 AATTCTGAAAATGAACGG-GTTCAAACTGATTCTTC
131 AATTCTGAAAATGAA-GGCGTTCAAACTGATTCTTC
* * ** * *
66607 TACCATATTGAGTTCAGAAACTTTACCTACAGAA-AGGATTAGCAATCTCCATGATCCAAAGCCA
1 TACAATATTGAGTTCAGAAACTTTACCTACAGAAGA-AAGGAGCAATCTCCAAGATTCAAAGCCA
* * * *
66671 GACAATGGCTTGAGCGAGAGAGAAATGCCTTCTGAAGATGTTGCACCGGCTCCCCAGGCTGCTGT
65 GACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGC
66736 TAATTCTGAAAATGA
130 TAATTCTGAAAATGA
66751 TCAGTTAACT
Statistics
Matches: 429, Mismatches: 37, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
162 143 0.33
163 1 0.00
164 1 0.00
165 284 0.66
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (165 bp):
TACAATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATCTCCAAGATTCAAAGCCAG
ACAATGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAGGTTGCTGCT
AATTCTGAAAATGAAGGCGTTCAAACTGATTCTTC
Found at i:66713 original size:327 final size:325
Alignment explanation
Indices: 66119--66750 Score: 1007
Period size: 327 Copynumber: 1.9 Consensus size: 325
66109 TGCTGTTACA
* ** *
66119 ATATTGAGTTCAGAAACTTTACCTACAGAAGAAAGGAGCAATTTCCAAGATTCAAAGCCAGTCAA
1 ATATTGAGTTCAGAAAATTTACCTACAGAAGAAAGGAGCAACCTCCAAGATTCAAAGCCAGACAA
*
66184 TGGCTTGAGTGAGAGAGAAATGCCTTCTGAAGATGTTGCACTGGCTCCCCAAGTTGCTGCTAATT
66 TGGCTTGAGTGAGAGAGAAATGCCTTCGGAAGATGTTGCACTGGCTCCCCAAGTTGCTGCTAATT
66249 CTGAAAATGAAGGCGTTCAAACTGATTCTTCTACAATATTGAGTTCAGAAACTTTACCTACGGAA
131 CTGAAAATGAAGGCGTTCAAACTGATTCTTCTACAATATTGAGTTCAGAAACTTTACCTAC-G-A
* * *
66314 GAAAGGTGCAATCTCCAAGATTCAAAGCCAGTCAATGGCTTGAGTAAGAGAGAAATGCCTTCTGA
194 GAAAGGTGCAATCTCCAAGATCCAAAGCCAGACAATGGCTTGAGCAAGAGAGAAATGCCTTCTGA
* *
66379 AGATGTTGCACTGGCTCCCCAGGTTGCTGCTAATTCTGAAAATGAAGTCGCTAAAACTGATTCTA
259 AGATGTTGCACCGGCTCCCCAGGCTGCTGCTAATTCTGAAAATGAAGTCGCTAAAACTGATTCTA
66444 CC
324 CC
* * *
66446 ATATTGAGTTCAGAAAATTTACCTACAGATGAGATGAGCAACCTCCAAGATTCAAAGCCAGACAA
1 ATATTGAGTTCAGAAAATTTACCTACAGAAGAAAGGAGCAACCTCCAAGATTCAAAGCCAGACAA
* ** *
66511 TGGCTTGAGTGAGAGAGAAATGCCTTCGGAAGATGTTGCATTGGCTCCCCTGGTTGCTGTTAATT
66 TGGCTTGAGTGAGAGAGAAATGCCTTCGGAAGATGTTGCACTGGCTCCCCAAGTTGCTGCTAATT
*
66576 CTGAAAATGAACGG-GTTCAAACTGATTCTTCTACCATATTGAGTTCAGAAACTTTACCTAC-AG
131 CTGAAAATGAA-GGCGTTCAAACTGATTCTTCTACAATATTGAGTTCAGAAACTTTACCTACGAG
* *
66639 AAAGGATTAGCAATCTCCATGATCCAAAGCCAGACAATGGCTTGAGCGAGAGAGAAATGCCTTCT
195 AAAGG--T-GCAATCTCCAAGATCCAAAGCCAGACAATGGCTTGAGCAAGAGAGAAATGCCTTCT
*
66704 GAAGATGTTGCACCGGCTCCCCAGGCTGCTGTTAATTCTGAAAATGA
257 GAAGATGTTGCACCGGCTCCCCAGGCTGCTGCTAATTCTGAAAATGA
66751 TCAGTTAACT
Statistics
Matches: 280, Mismatches: 21, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
324 7 0.03
326 1 0.00
327 270 0.96
328 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (325 bp):
ATATTGAGTTCAGAAAATTTACCTACAGAAGAAAGGAGCAACCTCCAAGATTCAAAGCCAGACAA
TGGCTTGAGTGAGAGAGAAATGCCTTCGGAAGATGTTGCACTGGCTCCCCAAGTTGCTGCTAATT
CTGAAAATGAAGGCGTTCAAACTGATTCTTCTACAATATTGAGTTCAGAAACTTTACCTACGAGA
AAGGTGCAATCTCCAAGATCCAAAGCCAGACAATGGCTTGAGCAAGAGAGAAATGCCTTCTGAAG
ATGTTGCACCGGCTCCCCAGGCTGCTGCTAATTCTGAAAATGAAGTCGCTAAAACTGATTCTACC
Done.