Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022521.1 Corchorus olitorius cultivar O-4 contig22554, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31491

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8499--8684
22
8.4
23
70
15
76
36
16
9
38
1.81
8581--8710
22
5.9
22
73
12
97
36
16
9
37
1.81
8650--8719
22
3.2
21
79
18
65
40
17
7
35
1.77
8875--8996
22
5.5
22
74
10
72
36
15
9
38
1.79
9139--9236
21
4.5
22
73
5
92
39
9
12
38
1.75
9139--9236
43
2.3
43
83
3
126
39
9
12
38
1.75
19211--19342
65
2.0
65
98
0
255
28
21
8
41
1.82
19705--19744
2
20.0
2
94
0
71
52
0
0
47
1.00
24012--24036
13
1.9
13
100
0
50
60
0
0
40
0.97
26255--26313
21
2.7
21
86
5
82
37
11
16
33
1.86
26204--26427
44
5.1
42
72
12
132
37
9
16
36
1.81
26240--26426
22
8.5
22
72
9
123
38
10
15
35
1.81
26240--26454
22
9.8
22
72
10
104
38
9
15
35
1.81
26256--26448
44
4.4
42
71
13
115
37
10
16
35
1.83
26650--26699
21
2.3
22
86
3
66
46
6
10
38
1.62
26801--26902
44
2.3
44
84
3
125
40
6
16
36
1.76
26801--26945
22
6.7
20
70
18
87
38
7
16
37
1.77
27022--27077
22
2.5
22
82
5
69
37
7
10
44
1.67
27371--27410
20
2.0
20
100
0
80
50
15
15
20
1.79
27445--27469
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!