Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022522.1 Corchorus olitorius cultivar O-4 contig22555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47777

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
844--881
11
3.5
11
96
3
69
81
0
18
0
0.69
846--884
10
3.8
10
83
16
53
82
0
17
0
0.68
2249--2277
9
3.2
9
100
0
58
89
0
10
0
0.48
10111--10302
95
2.0
96
97
1
368
19
17
15
47
1.83
18623--18652
5
6.0
5
100
0
60
0
0
20
80
0.72
32422--32500
31
2.5
32
81
6
90
13
20
31
34
1.92
32447--32505
32
1.9
31
86
6
84
11
18
37
32
1.87
32979--33152
93
1.9
93
91
0
285
32
14
1
51
1.51
32989--33177
93
2.0
93
87
0
270
33
13
1
50
1.51
33224--33276
27
1.9
27
88
3
79
39
5
9
45
1.60
36525--36575
26
2.0
25
85
14
68
47
1
9
41
1.48
39400--39436
2
19.0
2
91
5
58
45
0
0
54
1.00
41601--41635
17
2.1
17
94
0
61
25
17
5
51
1.67

Tables:   1

The End!