Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022523.1 Corchorus olitorius cultivar O-4 contig22556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51316

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1275--1312
19
2.0
19
100
0
76
31
15
5
47
1.68
8630--8666
17
2.2
17
100
0
74
54
5
10
29
1.57
12067--12113
8
5.9
8
80
16
53
40
0
6
53
1.27
12075--12113
16
2.5
16
91
4
62
41
0
5
53
1.23
18956--19004
24
2.0
24
100
0
98
51
16
8
24
1.71
23735--23772
19
2.0
19
89
0
58
86
10
2
0
0.66
24649--24709
33
2.0
30
87
12
88
52
9
9
27
1.66
25170--25223
24
2.2
24
86
3
72
5
18
0
75
0.98
37375--37437
31
2.0
31
100
0
126
34
19
25
20
1.96
37458--37530
32
2.3
32
95
2
130
16
26
23
34
1.95
37534--37602
34
2.0
34
94
0
120
26
30
13
30
1.93
37625--37694
33
2.1
33
100
0
140
37
24
15
22
1.93
37895--37978
42
2.0
42
92
0
141
36
15
2
45
1.59
43404--43433
14
2.1
14
100
0
60
36
20
20
23
1.95
44902--45083
91
2.0
89
90
2
283
26
19
15
37
1.92
46548--46579
8
4.0
8
95
0
55
46
12
0
40
1.42
47144--47176
2
16.5
2
93
0
57
45
0
0
54
0.99
49031--49080
20
2.5
20
96
0
91
60
0
4
36
1.16
49035--49101
22
3.1
22
87
4
84
59
2
5
31
1.36

Tables:   1

The End!