Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022524.1 Corchorus olitorius cultivar O-4 contig22557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136831

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1175--1219
21
2.1
22
95
4
83
62
13
11
13
1.55
1990--2029
2
19.5
2
94
5
71
47
0
2
50
1.14
2319--2648
178
1.9
178
84
3
450
34
13
16
35
1.88
3249--3274
2
13.0
2
100
0
52
50
0
0
50
1.00
3714--3762
18
2.7
18
78
6
55
24
28
26
20
1.99
4039--4114
31
2.5
31
77
14
86
40
17
7
34
1.78
5895--5956
29
2.1
29
87
0
88
41
22
1
33
1.64
19165--19202
15
2.5
15
91
0
58
34
31
2
31
1.72
31414--31484
31
2.3
32
76
11
76
26
22
23
26
2.00
31554--31669
53
2.2
53
84
7
155
31
25
5
37
1.78
31982--32015
2
17.5
2
87
6
52
47
0
0
52
1.00
33331--33679
174
2.0
174
99
0
689
48
6
8
36
1.61
33745--33929
93
2.0
93
91
0
298
51
2
11
34
1.52
34135--34208
29
2.5
30
82
10
89
14
28
10
45
1.79
34259--34336
31
2.5
31
87
0
111
26
30
26
15
1.96
35345--35369
2
12.5
2
100
0
50
48
0
0
52
1.00
47106--47135
7
4.1
7
91
8
51
13
0
0
86
0.57
47105--47133
8
3.8
8
90
9
51
10
0
0
89
0.48
47105--47135
15
2.1
15
100
0
62
12
0
0
87
0.55
48728--48777
21
2.4
21
90
6
75
6
32
40
22
1.78
60673--60777
53
2.0
53
92
0
174
34
6
13
45
1.69
61758--61798
17
2.5
17
88
4
57
43
9
4
41
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67638--67727
39
2.3
39
100
0
180
50
12
22
15
1.77
69025--69051
5
5.4
5
100
0
54
59
0
18
22
1.38
75309--75352
19
2.3
19
88
0
61
38
4
11
45
1.61
75966--76012
17
2.7
18
81
12
53
29
23
0
46
1.52
76155--76235
33
2.5
33
79
4
83
18
40
30
9
1.83
76296--76348
27
2.0
27
85
7
72
41
0
3
54
1.18
76307--76345
20
2.0
20
94
0
69
38
0
5
56
1.22
77043--77068
12
2.2
12
100
0
52
61
23
0
15
1.33
78128--78193
34
1.9
34
90
0
105
48
21
7
22
1.75
78906--78948
23
1.9
23
90
4
70
34
30
18
16
1.93
86586--86673
31
2.9
31
90
6
128
23
11
18
46
1.81
88120--88153
15
2.3
15
95
5
61
44
11
20
23
1.84
95674--95721
24
2.0
24
87
4
69
72
12
2
12
1.20
97076--97104
9
3.2
9
100
0
58
55
0
0
44
0.99
109263--109310
20
2.4
20
82
0
60
37
18
16
27
1.92
110425--110716
147
2.0
147
99
0
575
18
18
13
50
1.77
111982--112225
122
2.0
123
93
0
418
37
11
22
28
1.90
114816--114846
15
2.1
15
100
0
62
61
12
6
19
1.53
114876--114908
14
2.4
14
89
0
57
69
0
9
21
1.15
129973--130209
92
2.5
93
89
2
352
27
21
25
25
1.99
130609--130664
28
2.0
28
96
0
103
7
7
30
55
1.54

Tables:   1

The End!