Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022525.1 Corchorus olitorius cultivar O-4 contig22558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20405

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123--237
57
2.0
56
91
1
185
31
25
1
41
1.65
1354--1382
13
2.2
13
100
0
58
48
0
13
37
1.43
2415--2439
13
1.9
13
100
0
50
44
0
0
56
0.99
3165--3217
11
4.8
11
73
17
56
77
16
5
0
0.96
3492--3550
3
20.7
3
74
10
52
35
5
1
57
1.31
3492--3543
14
3.7
15
85
12
65
38
5
0
55
1.24
10195--10347
72
2.1
72
92
0
252
9
33
37
18
1.84
10195--10309
39
3.1
39
65
23
102
11
33
36
18
1.86
13586--13748
41
3.9
42
87
4
174
42
25
10
21
1.84
13621--13763
41
3.5
41
90
1
207
44
25
9
20
1.81
13576--13763
82
2.3
84
80
9
215
42
27
9
20
1.83
17950--18084
71
1.9
72
93
1
236
19
27
19
34
1.96
18985--19043
20
3.0
20
82
0
73
37
16
27
18
1.93

Tables:   1

The End!