Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022526.1 Corchorus olitorius cultivar O-4 contig22559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110340

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
734--759
12
2.2
12
100
0
52
46
0
30
23
1.53
1462--1636
41
4.2
41
85
6
219
41
26
11
20
1.86
3826--3860
2
17.5
2
93
0
61
51
2
0
45
1.16
4709--4741
2
16.5
2
93
0
57
0
0
48
51
1.00
7292--7339
11
4.7
11
78
21
52
39
6
20
33
1.78
11637--11708
11
6.8
10
81
10
81
20
48
19
11
1.79
11631--11708
21
3.7
21
91
1
111
20
48
19
11
1.79
13568--13615
11
4.7
11
78
21
52
39
6
20
33
1.78
22614--22662
25
1.9
24
84
12
62
40
0
0
59
0.98
24989--25034
21
2.2
21
84
7
58
67
6
6
19
1.36
27713--27758
19
2.4
19
100
0
92
41
17
6
34
1.75
28109--28172
21
3.1
21
71
24
55
54
15
7
21
1.66
41504--41898
183
2.2
183
90
1
625
33
16
30
20
1.94
43968--44005
2
19.0
2
94
0
67
47
0
0
52
1.00
43996--44249
135
1.9
134
96
0
472
34
14
16
34
1.89
45302--45385
23
3.9
22
78
7
91
35
14
8
41
1.76
46734--46763
11
2.7
11
94
0
51
20
30
26
23
1.98
48503--48546
2
22.0
2
86
9
63
47
2
2
47
1.27
49558--49726
22
7.7
22
74
10
82
34
13
10
42
1.77
49602--49729
22
5.9
22
75
9
111
35
14
10
40
1.79
53636--53737
37
2.8
37
75
12
104
50
4
7
37
1.53
54309--54342
17
1.9
17
88
5
50
44
26
0
29
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60781--60813
2
16.5
2
100
0
66
48
0
0
51
1.00
62916--62955
4
10.8
4
84
15
59
80
0
20
0
0.72
62913--62956
19
2.3
18
92
7
70
81
0
18
0
0.68
62910--62957
11
4.5
11
90
10
73
83
0
16
0
0.65
62910--62964
22
2.6
22
83
13
71
81
0
18
0
0.68
64893--64949
9
6.4
9
85
4
53
47
0
0
52
1.00
69456--69502
20
2.3
22
78
14
55
36
29
0
34
1.58
72754--72810
23
2.4
25
77
16
68
28
7
31
33
1.84
75741--75825
42
2.0
42
86
0
116
45
14
16
23
1.83
77170--77201
16
2.0
16
100
0
64
31
25
18
25
1.98
88430--88511
42
2.0
42
97
0
155
15
21
39
23
1.92
92788--92980
102
1.9
102
97
0
368
27
26
15
31
1.95
106739--106789
20
2.6
19
81
9
66
31
11
3
52
1.56
107636--107660
12
2.1
12
100
0
50
8
32
44
16
1.76
107686--107726
16
2.6
16
100
0
82
26
34
24
14
1.94

Tables:   1

The End!