Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022528.1 Corchorus olitorius cultivar O-4 contig22561, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175698

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10628--10779
76
2.0
76
80
2
171
15
30
27
25
1.96
11697--11748
27
1.9
27
88
0
77
15
19
9
55
1.67
17501--17653
76
2.0
76
80
2
173
15
30
27
26
1.96
20897--20923
4
6.8
4
100
0
54
25
0
22
51
1.48
21789--21856
34
2.0
34
97
0
127
41
19
29
10
1.84
21883--21931
21
2.4
21
86
3
64
4
10
12
73
1.22
22681--22709
13
2.2
13
100
0
58
17
13
48
20
1.81
23724--23851
64
2.0
64
96
0
238
35
11
14
38
1.83
23919--23974
5
11.2
5
75
21
55
75
0
1
23
0.90
23925--23968
12
3.6
12
90
9
63
75
0
2
22
0.92
27185--27216
2
16.5
2
93
6
57
50
0
0
50
1.00
27519--27543
13
1.9
13
100
0
50
88
0
12
0
0.53
27900--28096
97
2.0
97
100
0
394
40
14
9
36
1.77
29625--31014
692
2.0
694
96
0
2545
38
14
8
37
1.78
31405--31814
203
2.0
202
96
1
759
44
8
10
36
1.70
37763--37796
2
18.0
2
88
11
54
50
0
0
50
1.00
39396--39915
259
2.0
259
100
0
1040
35
22
11
30
1.90
39908--39942
17
1.9
19
88
11
56
65
8
8
17
1.44
43151--43192
17
2.5
17
100
0
84
21
38
9
30
1.85
61745--61827
33
2.5
33
100
0
166
44
15
16
22
1.86
65582--65619
2
19.0
2
100
0
76
50
0
0
50
1.00
70120--70162
10
4.0
10
84
9
50
23
55
20
0
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70117--70164
6
8.5
6
76
21
50
29
50
20
0
1.49
70439--70473
5
7.0
5
93
0
52
54
0
45
0
0.99
70694--70740
19
2.3
21
82
7
53
63
10
4
21
1.43
71879--71911
17
1.9
17
88
11
50
30
48
18
3
1.63
71904--72010
32
3.3
32
86
2
135
40
38
13
8
1.74
71904--72010
16
6.7
16
72
8
101
40
38
13
8
1.74
76528--76563
19
1.9
18
88
5
54
27
22
8
41
1.82
83885--83922
17
2.3
17
86
4
51
60
2
10
26
1.43
95934--95973
16
2.6
15
88
7
62
52
7
5
35
1.51
99715--100102
76
5.1
76
85
1
499
18
25
32
22
1.97
109308--109365
27
2.1
27
84
6
73
41
8
3
46
1.51
109487--109537
26
2.0
26
92
0
84
35
3
3
56
1.36
111020--111079
28
2.0
31
87
9
90
35
3
0
61
1.12
119916--119963
23
2.0
24
88
4
71
25
27
16
31
1.97
120164--120193
2
15.0
2
100
0
60
50
0
0
50
1.00
120607--120686
21
3.5
24
71
25
66
57
2
2
37
1.26
135136--135229
44
2.1
44
86
3
127
42
31
7
18
1.78
144356--144382
6
4.5
6
100
0
54
14
0
14
70
1.17
150879--150922
21
2.1
21
95
0
79
29
25
9
36
1.86
150911--150936
13
2.0
13
100
0
52
38
23
15
23
1.92
154633--154658
5
5.2
5
100
0
52
80
19
0
0
0.71
166669--166724
30
1.9
29
89
7
87
48
3
12
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166669--166732
30
2.1
30
85
5
83
50
3
12
34
1.56
173998--174080
31
2.7
30
77
3
94
33
6
18
42
1.74

Tables:   1

The End!