Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022529.1 Corchorus olitorius cultivar O-4 contig22562, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66599

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4004--4064
31
2.0
31
83
6
79
36
37
16
9
1.82
4044--4086
16
2.8
15
77
19
52
32
34
23
9
1.87
9661--9700
2
20.5
2
94
5
73
52
0
0
47
1.00
10330--10359
10
3.0
10
100
0
60
60
0
10
30
1.30
12861--12941
36
2.2
36
80
4
92
24
16
38
20
1.92
14893--14959
21
3.2
21
100
0
134
14
0
26
58
1.37
15690--15719
12
2.4
13
94
5
53
26
0
10
63
1.26
18516--18659
76
1.9
76
81
5
175
17
28
29
25
1.97
27427--27484
29
2.0
29
100
0
116
17
13
13
55
1.70
28689--28718
12
2.4
13
94
5
53
26
0
10
63
1.26
31635--31850
106
2.0
108
91
1
355
43
15
6
33
1.74
34984--35362
165
2.3
165
90
1
582
29
31
23
16
1.96
35253--35624
150
2.5
149
86
1
537
27
31
26
15
1.95
35797--36201
76
5.4
76
80
8
413
21
34
24
19
1.96
35797--36201
146
2.7
148
81
4
431
21
34
24
19
1.96
38872--38897
13
2.0
13
100
0
52
46
15
0
38
1.46
39246--39281
19
1.9
18
94
5
63
19
22
8
50
1.74
41630--41669
20
2.0
20
100
0
80
35
5
0
60
1.19
42366--42400
5
7.0
5
90
9
54
42
20
37
0
1.52
42366--42400
16
2.3
16
90
9
56
42
20
37
0
1.52
47652--47726
26
2.9
26
75
22
77
38
0
1
60
1.06
54127--54218
44
2.1
44
85
4
123
31
21
17
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62691--62726
16
2.2
17
90
5
56
52
2
2
41
1.30
66060--66101
22
1.9
22
85
9
59
45
19
4
30
1.71

Tables:   1

The End!