Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022531.1 Corchorus olitorius cultivar O-4 contig22564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  233895

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2527--2567
21
1.9
22
85
5
57
9
17
29
43
1.80
2865--3065
105
1.9
102
90
5
314
34
11
2
50
1.54
3018--3061
23
1.9
23
81
9
54
25
13
0
61
1.32
4840--4922
42
2.0
42
92
0
139
34
6
18
40
1.75
15031--15062
6
5.3
6
100
0
64
50
34
0
15
1.45
15106--15226
60
2.0
60
98
0
233
49
21
7
21
1.73
16569--16609
22
1.9
22
85
5
57
12
0
21
65
1.25
36962--37018
3
19.0
3
100
0
114
33
0
0
66
0.92
41302--41385
26
3.2
26
69
21
84
20
10
17
51
1.75
41292--41399
53
2.0
53
100
0
216
23
11
18
47
1.80
53574--53598
7
3.6
7
100
0
50
84
0
16
0
0.63
56385--56432
21
2.3
21
79
10
55
45
27
6
20
1.75
71959--71991
14
2.3
15
94
5
59
60
0
0
39
0.97
88070--88107
19
2.0
19
100
0
76
31
10
10
47
1.72
88064--88117
19
2.5
22
77
22
69
38
9
7
44
1.65
90796--90868
34
2.1
34
78
12
78
42
21
15
20
1.89
90811--90918
37
3.0
35
84
8
110
38
16
15
28
1.90
90860--90950
46
2.0
46
95
0
164
40
12
15
31
1.84
90919--91026
52
2.1
52
89
0
162
40
17
15
25
1.89
91349--91391
22
1.9
23
85
4
61
16
11
4
67
1.38
91687--91724
18
2.1
18
90
0
58
63
0
5
31
1.17
92736--92829
45
2.2
42
86
7
127
35
6
20
38
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96022--96078
27
2.1
27
83
0
69
35
7
7
50
1.56
96030--96083
27
2.0
27
92
3
90
29
7
7
55
1.55
101083--101113
14
2.1
15
94
5
55
12
6
16
64
1.47
103447--103850
181
2.3
178
83
4
483
35
16
13
33
1.89
104176--104228
17
3.2
16
76
15
56
47
18
1
32
1.60
112406--112461
25
2.2
25
83
0
76
25
21
26
26
1.99
115598--115642
10
4.5
10
82
0
54
33
15
22
28
1.95
124201--124250
17
2.9
17
69
0
55
32
12
24
32
1.91
136873--136902
2
15.5
2
93
6
53
46
0
0
53
1.00
136872--136908
8
4.4
9
90
10
53
43
0
0
56
0.99
137344--137431
45
2.0
45
95
0
158
42
12
11
34
1.79
138733--139057
22
14.7
22
73
12
193
40
9
14
35
1.78
138754--139057
43
6.9
43
74
10
213
40
9
13
36
1.78
138779--139035
135
1.9
135
99
0
505
40
9
13
36
1.76
139043--139250
106
2.0
106
98
0
398
39
13
16
29
1.88
143301--143386
24
3.6
24
85
0
118
50
22
8
19
1.74
161850--161882
15
2.1
16
88
5
50
0
24
0
75
0.80
161850--161884
18
1.9
18
94
0
61
0
22
0
77
0.78
165566--165609
2
21.5
2
95
4
79
50
2
0
47
1.13
177896--177965
22
3.0
23
71
23
58
32
5
2
58
1.36
178153--178200
24
2.0
24
95
0
87
41
6
25
27
1.79
202805--202843
7
5.6
7
100
0
78
0
12
0
87
0.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
207296--207340
22
2.0
22
86
4
63
26
15
8
48
1.74
212065--212124
4
15.0
4
81
11
54
45
23
6
25
1.77
220555--220692
31
4.5
31
81
0
141
32
23
23
20
1.98
221232--221296
33
2.0
33
87
6
96
21
26
21
30
1.98
221890--221948
31
1.9
31
93
6
102
33
10
10
45
1.72
223965--224014
25
2.0
25
96
0
91
24
18
16
42
1.89
224997--225069
26
2.6
29
89
10
116
43
8
13
34
1.74

Tables:   1

The End!