Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022534.1 Corchorus olitorius cultivar O-4 contig22567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4370
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34


Found at i:2614 original size:77 final size:77

Alignment explanation


    Indices: 2487--2640  Score: 308
    Period size: 77  Copynumber: 2.0  Consensus size: 77

       2477 TATTAATTAA

                                                                             
       2487 TCACATCTTCATGCAAACACAGTTTAAAATTTGAGAGAGTCAAATAAATATGTAGTTCTACTCTA
          1 TCACATCTTCATGCAAACACAGTTTAAAATTTGAGAGAGTCAAATAAATATGTAGTTCTACTCTA

                        
       2552 CTGATATACTAT
         66 CTGATATACTAT

                                                                             
       2564 TCACATCTTCATGCAAACACAGTTTAAAATTTGAGAGAGTCAAATAAATATGTAGTTCTACTCTA
          1 TCACATCTTCATGCAAACACAGTTTAAAATTTGAGAGAGTCAAATAAATATGTAGTTCTACTCTA

                        
       2629 CTGATATACTAT
         66 CTGATATACTAT

       2641 GAAAAAAAGC


Statistics
Matches: 77,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  77   77  1.00

ACGTcount: A:0.38, C:0.17, G:0.12, T:0.34


Consensus pattern (77 bp):   
TCACATCTTCATGCAAACACAGTTTAAAATTTGAGAGAGTCAAATAAATATGTAGTTCTACTCTA
CTGATATACTAT
Done.