Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022537.1 Corchorus olitorius cultivar O-4 contig22570, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43396

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2540--2642
43
2.4
44
86
1
145
37
7
12
41
1.72
2540--2638
22
4.5
22
81
5
103
37
7
13
42
1.71
2711--2800
3
31.3
3
71
26
54
27
4
0
67
1.09
2709--2813
19
5.1
19
70
22
70
27
5
0
66
1.14
2705--2800
11
8.5
11
72
19
65
29
4
0
66
1.10
3161--3209
3
16.0
3
91
4
80
34
2
0
63
1.06
3987--4011
13
1.9
13
100
0
50
68
0
0
32
0.90
8146--8225
28
2.9
28
86
0
115
32
20
20
27
1.97
8279--8323
23
2.0
22
82
4
54
15
4
11
68
1.34
12108--12282
60
3.0
60
85
3
230
33
15
25
25
1.95
12193--12282
28
3.0
29
69
23
87
33
14
25
26
1.94
12155--12272
32
3.8
33
70
20
94
33
15
25
26
1.95
12339--12610
38
7.1
38
94
1
436
31
20
15
31
1.94
14858--14957
40
2.5
41
98
1
193
32
14
3
51
1.57
23778--23848
27
2.7
27
88
2
99
15
19
26
38
1.92
23783--23860
26
3.0
26
84
1
84
16
16
24
42
1.88
24179--24221
19
2.3
19
91
0
68
13
18
32
34
1.90
27961--28026
28
2.4
28
94
0
114
19
33
25
21
1.97
28853--28891
20
2.0
20
94
0
69
56
5
0
38
1.22
29881--29924
11
4.0
11
85
8
54
54
2
0
43
1.12
30815--30887
30
2.4
30
93
0
128
20
17
21
39
1.92
31101--31180
41
1.9
42
87
2
117
41
12
23
22
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39840--40102
132
2.0
132
87
4
379
47
2
11
38
1.52
42434--42501
31
2.2
31
97
0
127
29
25
22
23
1.99

Tables:   1

The End!