Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022540.1 Corchorus olitorius cultivar O-4 contig22573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80689

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8086--8110
6
4.2
6
100
0
50
16
16
52
16
1.76
9491--9539
25
2.0
25
95
0
89
30
20
34
14
1.92
10031--10059
14
2.1
14
100
0
58
48
24
6
20
1.74
18331--18371
14
2.8
15
89
10
59
43
2
0
53
1.13
18328--18360
17
1.9
17
93
0
57
45
0
0
54
0.99
26753--26979
121
1.9
121
92
0
382
24
26
24
25
2.00
36443--36476
8
4.1
8
88
3
50
73
2
14
8
1.19
43583--43637
2
28.5
2
74
7
51
43
1
0
54
1.10
43583--43637
24
2.2
26
83
6
69
43
1
0
54
1.10
50815--51232
206
2.0
204
92
2
694
25
19
24
29
1.98
62127--62191
34
2.0
34
90
6
107
24
4
12
58
1.53
68349--68461
27
4.0
27
84
13
163
43
8
27
20
1.81
69217--69246
4
7.5
4
92
0
51
46
26
3
23
1.68
71931--71960
14
2.1
14
93
0
51
33
0
26
40
1.57
73190--73277
29
3.0
29
77
6
90
11
10
32
45
1.74
73902--73929
2
14.0
2
100
0
56
50
0
0
50
1.00
74103--74142
21
1.9
21
94
0
71
62
17
7
12
1.52
74286--74318
12
2.8
12
86
4
50
81
0
6
12
0.85
79684--79724
12
3.3
12
93
3
64
24
4
21
48
1.69

Tables:   1

The End!