Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022543.1 Corchorus olitorius cultivar O-4 contig22576, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1961
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31


Found at i:513 original size:4 final size:4

Alignment explanation


    Indices: 506--547  Score: 84
    Period size: 4  Copynumber: 10.5  Consensus size: 4

        496 TACCAAAGGA

                                                                
        506 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA

        548 GTGAATGAAA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   38  1.00

ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24


Consensus pattern (4 bp):   
AAAT

Done.