Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022544.1 Corchorus olitorius cultivar O-4 contig22577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17349

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--271
4
56.5
4
67
19
105
65
0
7
26
1.21
60--296
44
5.3
44
89
3
323
65
0
8
25
1.23
10--242
8
30.1
8
68
15
82
63
1
9
25
1.32
1103--1130
2
14.0
2
100
0
56
50
0
0
50
1.00
2278--2388
55
2.0
55
100
0
222
34
23
1
40
1.65
2453--2534
43
1.9
42
92
2
137
30
6
15
47
1.70
8622--8752
37
3.5
37
78
4
136
35
19
17
26
1.94
8718--8874
58
2.7
58
95
1
271
34
15
15
34
1.90
8842--8958
28
4.4
28
75
12
120
35
14
16
34
1.89
8870--8986
50
2.3
50
86
1
162
36
11
17
34
1.86
12128--12167
20
2.0
21
85
14
57
32
12
12
42
1.80

Tables:   1

The End!