Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022547.1 Corchorus olitorius cultivar O-4 contig22580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40674

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7142--7180
17
2.6
14
78
21
51
33
10
5
51
1.58
7145--7179
17
2.1
17
100
0
70
28
11
5
54
1.59
10749--10783
11
3.2
11
91
0
61
80
17
2
0
0.84
16711--16752
12
3.5
13
84
12
54
0
0
33
66
0.92
17966--18073
48
2.3
46
87
4
144
54
4
18
22
1.61
19348--19385
9
4.3
9
90
3
60
31
23
0
44
1.54
19348--19385
18
2.2
17
95
4
67
31
23
0
44
1.54
22135--22200
24
2.8
24
85
0
87
12
6
28
53
1.62
22136--22223
24
3.6
24
80
7
81
14
6
26
52
1.67
22800--22830
15
2.0
16
93
6
55
77
6
3
12
1.08
22912--22997
42
2.1
41
91
2
136
39
16
15
29
1.89
22993--23038
23
2.0
22
91
4
74
32
13
8
45
1.73
23018--23096
41
2.0
40
85
9
108
31
16
12
39
1.86
22915--23104
102
1.9
101
82
7
240
35
15
12
36
1.86
27178--27204
2
13.5
2
100
0
54
48
0
0
51
1.00
31386--31415
2
15.5
2
93
6
53
53
0
0
46
1.00
32193--32432
83
2.9
83
98
0
453
33
9
11
45
1.73
33351--33431
39
2.0
40
92
2
137
50
8
3
37
1.51
33422--33468
25
1.9
25
87
12
71
29
6
8
55
1.55
33547--33950
201
2.0
204
92
2
681
35
11
8
44
1.71
34472--34540
35
1.9
36
91
2
113
59
8
10
21
1.57
35812--35923
56
2.0
57
89
1
172
32
21
15
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38364--38442
22
3.6
22
73
19
74
43
13
7
35
1.73
38579--38639
22
2.8
22
80
2
70
37
13
13
36
1.83
38601--38653
21
2.5
20
79
11
52
35
15
11
37
1.83
38734--38812
22
3.6
21
76
10
68
36
11
10
41
1.75
38799--38855
22
2.6
22
88
0
87
35
14
12
38
1.83
38820--38938
22
5.4
21
73
13
80
31
18
10
39
1.84
38928--39013
22
3.9
22
75
0
64
39
19
8
32
1.81
39073--39132
22
2.7
22
84
0
75
48
20
3
28
1.65
39750--39783
13
2.6
13
85
0
50
50
0
0
50
1.00

Tables:   1

The End!