Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022550.1 Corchorus olitorius cultivar O-4 contig22583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29924

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195--457
139
1.9
140
82
9
329
37
8
12
41
1.73
3135--3400
139
1.9
141
83
9
355
37
8
13
40
1.75
6067--6332
139
1.9
141
84
7
362
39
8
12
39
1.74
7646--7747
36
2.8
36
96
0
186
6
39
42
11
1.68
7716--7770
23
2.4
23
96
0
101
9
38
40
12
1.75
7680--7805
59
2.2
58
91
4
200
7
37
42
13
1.72
7740--7866
35
3.6
35
82
4
166
7
35
43
13
1.73
10601--10863
139
1.9
141
83
9
349
38
8
12
39
1.74
21915--21950
7
4.9
7
87
12
54
27
0
0
72
0.85
21915--21948
16
2.1
16
100
0
68
23
0
0
76
0.79
21913--21964
23
2.3
22
81
15
61
28
1
0
69
0.99
22153--22210
21
2.8
20
71
16
55
24
37
34
3
1.72
22505--22554
15
3.1
16
73
21
59
38
6
24
32
1.79
24516--24557
15
2.7
15
96
3
75
66
14
7
11
1.43
27690--27726
11
3.5
11
79
20
51
16
18
48
16
1.81

Tables:   1

The End!