Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022553.1 Corchorus olitorius cultivar O-4 contig22586, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5480
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33


Found at i:4092 original size:14 final size:14

Alignment explanation


    Indices: 4073--4099  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       4063 GGCCCATTCA

                          
       4073 ATTCATTTTTTTTC
          1 ATTCATTTTTTTTC

                         
       4087 ATTCATTTTTTTT
          1 ATTCATTTTTTTT

       4100 TTAACTTTGG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74


Consensus pattern (14 bp):   
ATTCATTTTTTTTC
Done.