Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022560.1 Corchorus olitorius cultivar O-4 contig22593, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11855

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2437--2471
2
17.5
2
87
0
52
54
2
42
0
1.15
4391--6238
186
10.2
184
83
6
2147
30
15
17
36
1.91
4724--4762
18
2.2
18
95
0
69
33
10
7
48
1.66
5089--5126
18
2.1
18
95
0
67
31
10
7
50
1.66
5272--5307
18
2.0
18
88
0
54
36
8
8
47
1.64
5290--5637
161
2.1
165
82
6
415
30
16
17
35
1.92
5618--5655
18
2.1
18
95
0
67
31
10
7
50
1.66
4482--6216
531
3.2
526
85
6
2082
30
15
17
36
1.91
5804--5841
18
2.1
18
95
0
67
31
10
7
50
1.66
6721--6782
31
2.0
31
96
0
115
30
22
4
41
1.74
6854--6900
22
2.1
22
84
0
58
23
12
2
61
1.42
6794--6972
93
1.9
93
91
0
295
34
12
2
50
1.53
7605--7638
16
2.1
16
88
0
50
8
14
35
41
1.77
10650--10681
1
32.0
1
100
0
64
0
0
0
100
0.00
10972--11049
41
1.9
41
91
0
129
41
3
15
39
1.65

Tables:   1

The End!